CLUBS

 

In an effort to strengthen the collaborations between the 5 teams, “scientific clubs” will be created to serve as bridges between the teams. The goal of these informal clubs will be to stimulate reflection and scientific strategies of internal collaborations that should lead to common grant deposit. They will also have a role in proposing seminars either with internal or external orators.

  • Bioinformatics (H. Le Nagard,  A. Bridier-Nahmias)

    Next generation sequencing methods have massively increased the amount of sequences a laboratory can produce. From whole genome sequence, to RNAseq and polymorphism analysis, all these applications require some computational skill to be analyzed. The aim of this club will be to do a survey of the literature in the field to follow the new sequencing techniques and tools to analyze them and to allow the different members of the unit to share and improve their experience on these data. Some introductory classes in R and perl may also be proposed in the club. The club will be in connexion with the INTEGRASEQ project funded to University Paris Diderot where next-generation sequencing machines and bioinformatics tools are being acquired, Hervé Le Nagard being the responsible for the Medical School

  Workshop Day DD/MM/YYYY Time Place Animation
1 Système : manipulation de l’environnement Linux
Jeudi 08/03/2018 9h-11h TP 170 (1er étage) A. Bridier-Nahmias, J. beghain
2 Génome: Vocabulaire en génomique & TP « Fichier Mystère »
Jeudi 05/04/2018 9h-11h TP 170 (1er étage) O. Tenaillon, A. Bridier-Nahmias
3 Accès serveur & Maping
Jeudi 03/05/2018 9h-11h TP 170 (1er étage) H. Le Nagard, A. Bridier-Nahmias, J. beghain
4 Analyse de génome évolués
Jeudi 31/05/2018 9h-11h TP 170 (1er étage) O. Tenaillon
5 Assemblage & Annotation
Jeudi 21/06/2018 9h-11h TP 170 (1er étage) A. Bridier-Nahmias, J. Beghain
6 16S: étapes traitement / post-traitement
Jeudi 20/09/2018 9h-11h TP 170 (1er étage) O. Tenaillon, A. Bridier-Nahmias
7 16S: cours appliqué
A définir
TP 170 (1er étage) A. Bridier-Nahmias
8 Phylogénie théorique
A définir
TP 170 (1er étage) O. Tenaillon, B. Visseaux
9 Phylogénie appliquée
A définir
TP 170 (1er étage) B. Visseaux


  • Clinical Research (A. Lefort, X. Duval)

    Based on a common motivation of the clinical researchers originating from the five teams, the objective will be to develop during the 5 next years an innovative network of epidemio-clinical research integrated in IAME, considering that the patient is simultaneously the source and the aim of this construction. It is expected to sustain a strong and direful interdisciplinary strategy of research associated with training in this field.  The two first steps will be: i) a multidisciplinary monthly meeting dedicated to this thematic, with active participation of both fundamental and clinical researchers to stimulate polymorphic interactions among the different teams, and ii) the common analysis and recognition of the current status of publications and ongoing studies chaired by one of the clinicians of IAME. This step will be the cornerstone for prospective brainstorming, especially to design and perform new common clinical research based-protocols.

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  • Statistics (Clotilde Lepers, Thu Thuy Nguyen, Cédric Laouénan)

These club is an introduction to the software R during several half day workshops.

R is rapidly becoming the leading language in data science and statistics. Today, the R programming language is the tool of choice for data scientists in every field.

What you’ll learn:

– R language fundamentals and basic syntax;

– What R is and how it’s used to perform data analysis and graphics.

 

  Workshop Day DD/MM/YYYY Time Place
1 Prise en main de R et statistiques descriptives partie 1 mercredi 10/01/2018 10h-12h30 TP 170 (1er étage)
2 Statistiques descriptives partie 2 et graphiques simples mercredi 14/02/2018 10h-12h30 TP 170 (1er étage)
3 Tests statistiques usuels 1/2 mercredi 14/03/2018 10h-12h30 TP 170 (1er étage)
4 Tests statistiques usuels 2/2 mercredi 11/04/2018 10h-12h30 TP 170 (1er étage)
5 Programmation avancée mercredi 16/05/2018 10h-12h30 TP 170 (1er étage)
6 Graphiques avancés avec ggplot2 mercredi 13/06/2018 10h-12h30 TP 170 (1er étage)
7 Statistiques avancées partie 1 mercredi 12/09/2018 10h-12h30 TP 170 (1er étage)
8 Statistiques avancées partie 2 mercredi 17/10/2018 10h-12h30 TP 170 (1er étage)
9 Statistiques avancées partie 3 mercredi 14/11/2018 10h-12h30 TP 170 (1er étage)

 

no event