Members
 | First name: Christophe Last name: Sola Function: Senior Scientist Position: Professor of Microbiology Email: christophe.solauniversite-paris-saclay.fr |
Research interest
Tuberculosis, Genomics, Evolutionary biology, Genomic epidemiology, Antimicrobioresistance, Machine learning, Computational Biology, Translational research, Microbiology, Infectious Diseases, Public Health
Education
Degree
1986: Hematology (DES Biologie medicale, Lyon)
1988: PharmD, Grenoble University
1991: PhD, Université Pierre et Marie Curie, Paris
2001: Habilitation, Université des Antilles et de la Guyane
1988: PharmD, Grenoble University
1991: PhD, Université Pierre et Marie Curie, Paris
2001: Habilitation, Université des Antilles et de la Guyane
Academic positions
1998-2007: Permanent Scientist, Institut Pasteur
2007-present : Professor of Microbiology, University Paris-Saclay
2007-present : Professor of Microbiology, University Paris-Saclay
Research training (post doctoral)
2007-2020: Head of the IGEPE research team, I2BC, UMR9198
List of the main publications
Guyeux C, Senelle G, Refrégier G, Bretelle-Establet F, Cambau E, Sola C
Connection between two historical tuberculosis outbreak sites in Japan, Honshu, by a new ancestral Mycobacterium tuberculosis L2 sublineage.
Epidemiology and Infection 2022, 1-25.
Menardo F, Rutaihwa LK, Zwyer M, Borrell S, Comas I, Conceição EC, Coscolla M, Cox H, Joloba M, Dou HY, Feldmann J, Fenner L, Fyfe J, Gao Q, García de Viedma D, Garcia-Basteiro AL, Gygli SM, Hella J, Hiza H, Jugheli L, Kamwela L, Kato-Maeda M, Liu Q, Ley SD, Loiseau C, Mahasirimongkol S, Malla B, Palittapongarnpim P, Rakotosamimanana N, Rasolofo V, Reinhard M, Reither K, Sasamalo M, Silva Duarte R, Sola C, Suffys P, Batista Lima KV, Yeboah-Manu D, Beisel C, Brites D, Gagneux S
Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim..
F1000Research 2021, 10, 60.
Guyeux C, Sola C, Noûs C, Refrégier G
CRISPRbuilder-TB: "CRISPR-builder for tuberculosis". Exhaustive reconstruction of the CRISPR locus in mycobacterium tuberculosis complex using SRA.
PLoS computational biology 2021, 17, e1008500.
Klotoe BJ, Kurepina N, Zholdibayeva E, Panaiotov S, Kreiswirth BN, Anthony R, Sola C, Refrégier G
NTF-RINT, a new method for the epidemiological surveillance of MDR Mycobacterium tuberculosis L2/Beijing strains..
Tuberculosis (Edinburgh, Scotland) 2020, 120, 101894.
Refrégier G, Sola C, Guyeux C
Unexpected diversity of CRISPR unveils some evolutionary patterns of repeated sequences in Mycobacterium tuberculosis..
BMC genomics 2020, 21, 841.
Masoud K, Araj GF, Reslan L, Fadlallah S, Wehbe M, Itani L, Avedissian A, Dbaibo G, Saade A, Refrégier G, Sola C, Matar GM
Spoligotyping of Mycobacterium tuberculosis isolates using Luminex®-based method in Lebanon..
Journal of infection in developing countries 2020, 14, 878-885.
Pierre-Audigier C, Talla C, Alame-Emane AK, Audigier B, Grall N, Ruimy R, Andremont A, Cadet-Daniel V, Sola C, Takiff H, Gicquel B, Vray M, Armand-Lefevre L
Tuberculosis trends in a hot-spot region in Paris, France.
The International Journal of Tuberculosis and Lung Disease: The Official Journal of the International Union Against Tuberculosis and Lung Disease 2020, 24, 428-435.
Haddaoui M, Sola C, Raouafi N, Korri-Youssoufi H
E-DNA detection of rpoB gene resistance in Mycobacterium tuberculosis in real samples using Fe(3)O(4)/polypyrrole nanocomposite..
Biosensors & bioelectronics 2019, 128, 76-82.
Conceição EC, Refregier G, Gomes HM, Olessa-Daragon X, Coll F, Ratovonirina NH, Rasolofo-Razanamparany V, Lopes ML, van Soolingen D, Rutaihwa L, Gagneux S, Bollela VR, Suffys PN, Duarte RS, Lima KVB, Sola C
Mycobacterium tuberculosis lineage 1 genetic diversity in Pará, Brazil, suggests common ancestry with east-African isolates potentially linked to historical slave trade..
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2019, 73, 337-341.
Guernier-Cambert V, Diefenbach-Elstob T, Klotoe BJ, Burgess G, Pelowa D, Dowi R, Gula B, McBryde ES, Refrégier G, Rush C, Sola C, Warner J
Diversity of Mycobacterium tuberculosis in the Middle Fly District of Western Province, Papua New Guinea: microbead-based spoligotyping using DNA from Ziehl-Neelsen-stained microscopy preparations..
Scientific reports 2019, 9, 15549.
Barcellos RB, de Almeida IN, da Silva EC, Gomes HM, de Assis Figueredo LJ, Halon ML, Dalla Costa ER, Dos Santos ÍR, Vater MC, Alves S, da Silva Carvalho W, Suffys P, Sola C, de Miranda SS, Rossetti ML, Kritski A
Multicenter evaluation of TB-SPRINT 59-Plex Beamedex®: accuracy and cost analysis..
BMC infectious diseases 2019, 19, 1047.
Anselmo LMP, Conceição EC, Namburete E, Feliciano C, Spindola S, Sola C, Bollela VR
Mycobacterium tuberculosis spoligotypes and drug-resistant characterization from Beira compared to genotypes circulating in Mozambique..
Revista da Sociedade Brasileira de Medicina Tropical 2019, 52, e20190257.
Acosta F, Agapito J, Cabibbe AM, Cáceres T, Sola C, Pérez-Lago L, Abascal E, Herranz M, Meza E, Klotoe B, Muñoz P, Rossolini GM, Bartoloni A, Tortoli E, Cirillo DM, Gotuzzo E, García de Viedma D
Exportation of MDR TB to Europe from Setting with Actively Transmitted Persistent Strains in Peru..
Emerging infectious diseases 2019, 25, 596-598.
Klotoe BJ, Molina-Moya B, Gomes HM, Gomgnimbou MK, Oliveira Suzarte L, Féres Saad MH, Ali S, Dominguez J, Pimkina E, Zholdybayeva E, Sola C, Refrégier G
TB-EFI, a novel 18-Plex microbead-based method for prediction of second-line drugs and ethambutol resistance in Mycobacterium tuberculosis complex..
Journal of microbiological methods 2018, 152, 10-17.
Coll F, Phelan J, Hill-Cawthorne GA, Nair MB, Mallard K, Ali S, Abdallah AM, Alghamdi S, Alsomali M, Ahmed AO, Portelli S, Oppong Y, Alves A, Bessa TB, Campino S, Caws M, Chatterjee A, Crampin AC, Dheda K, Furnham N, Glynn JR, Grandjean L, Minh Ha D, Hasan R, Hasan Z, Hibberd ML, Joloba M, Jones-López EC, Matsumoto T, Miranda A, Moore DJ, Mocillo N, Panaiotov S, Parkhill J, Penha C, Perdigão J, Portugal I, Rchiad Z, Robledo J, Sheen P, Shesha NT, Sirgel FA, Sola C, Oliveira Sousa E, Streicher EM, Helden PV, Viveiros M, Warren RM, McNerney R, Pain A, Clark TG
Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis..
Nature genetics 2018, 50, 307-316.
Coll F, Phelan J, Hill-Cawthorne GA, Nair MB, Mallard K, Ali S, Abdallah AM, Alghamdi S, Alsomali M, Ahmed AO, Portelli S, Oppong Y, Alves A, Bessa TB, Campino S, Caws M, Chatterjee A, Crampin AC, Dheda K, Furnham N, Glynn JR, Grandjean L, Ha DM, Hasan R, Hasan Z, Hibberd ML, Joloba M, Jones-López EC, Matsumoto T, Miranda A, Moore DJ, Mocillo N, Panaiotov S, Parkhill J, Penha C, Perdigão J, Portugal I, Rchiad Z, Robledo J, Sheen P, Shesha NT, Sirgel FA, Sola C, Sousa EO, Streicher EM, Van Helden P, Viveiros M, Warren RM, McNerney R, Pain A, Clark TG
Author Correction: Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis..
Nature genetics 2018, 50, 764.
Molina-Moya B, Agonafir M, Blanco S, Dacombe R, Gomgnimbou MK, Spinasse L, Gomes-Fernandes M, Datiko DG, Edwards T, Cuevas LE, Dominguez J, Sola C
Microbead-based spoligotyping of Mycobacterium tuberculosis from Ziehl-Neelsen-stained microscopy preparations in Ethiopia..
Scientific reports 2018, 8, 3987.
Molina-Moya B, Gomgnimbou MK, Spinasse L, Obasanya J, Oladimeji O, Dacombe R, Edwards T, Daragon XO, Lawson L, Abdurrahman ST, Cuevas LE, Dominguez J, Sola C
Mycobacterium tuberculosis complex genotypes circulating in Nigeria based on spoligotyping obtained from Ziehl-Neelsen stained slides extracted DNA..
PLoS neglected tropical diseases 2018, 12, e0006242.
Molina-Moya B, Abdurrahman ST, Madukaji LI, Gomgnimbou MK, Spinasse L, Gomes-Fernandes M, Gomes HM, Kacimi S, Dacombe R, Bimba JS, Lawson L, Sola C, Cuevas LE, Dominguez J
Genetic characterization of Mycobacterium tuberculosis complex isolates circulating in Abuja, Nigeria..
Infection and drug resistance 2018, 11, 1617-1625.
Connection between two historical tuberculosis outbreak sites in Japan, Honshu, by a new ancestral Mycobacterium tuberculosis L2 sublineage.
Epidemiology and Infection 2022, 1-25.
Menardo F, Rutaihwa LK, Zwyer M, Borrell S, Comas I, Conceição EC, Coscolla M, Cox H, Joloba M, Dou HY, Feldmann J, Fenner L, Fyfe J, Gao Q, García de Viedma D, Garcia-Basteiro AL, Gygli SM, Hella J, Hiza H, Jugheli L, Kamwela L, Kato-Maeda M, Liu Q, Ley SD, Loiseau C, Mahasirimongkol S, Malla B, Palittapongarnpim P, Rakotosamimanana N, Rasolofo V, Reinhard M, Reither K, Sasamalo M, Silva Duarte R, Sola C, Suffys P, Batista Lima KV, Yeboah-Manu D, Beisel C, Brites D, Gagneux S
Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim..
F1000Research 2021, 10, 60.
Guyeux C, Sola C, Noûs C, Refrégier G
CRISPRbuilder-TB: "CRISPR-builder for tuberculosis". Exhaustive reconstruction of the CRISPR locus in mycobacterium tuberculosis complex using SRA.
PLoS computational biology 2021, 17, e1008500.
Klotoe BJ, Kurepina N, Zholdibayeva E, Panaiotov S, Kreiswirth BN, Anthony R, Sola C, Refrégier G
NTF-RINT, a new method for the epidemiological surveillance of MDR Mycobacterium tuberculosis L2/Beijing strains..
Tuberculosis (Edinburgh, Scotland) 2020, 120, 101894.
Refrégier G, Sola C, Guyeux C
Unexpected diversity of CRISPR unveils some evolutionary patterns of repeated sequences in Mycobacterium tuberculosis..
BMC genomics 2020, 21, 841.
Masoud K, Araj GF, Reslan L, Fadlallah S, Wehbe M, Itani L, Avedissian A, Dbaibo G, Saade A, Refrégier G, Sola C, Matar GM
Spoligotyping of Mycobacterium tuberculosis isolates using Luminex®-based method in Lebanon..
Journal of infection in developing countries 2020, 14, 878-885.
Pierre-Audigier C, Talla C, Alame-Emane AK, Audigier B, Grall N, Ruimy R, Andremont A, Cadet-Daniel V, Sola C, Takiff H, Gicquel B, Vray M, Armand-Lefevre L
Tuberculosis trends in a hot-spot region in Paris, France.
The International Journal of Tuberculosis and Lung Disease: The Official Journal of the International Union Against Tuberculosis and Lung Disease 2020, 24, 428-435.
Haddaoui M, Sola C, Raouafi N, Korri-Youssoufi H
E-DNA detection of rpoB gene resistance in Mycobacterium tuberculosis in real samples using Fe(3)O(4)/polypyrrole nanocomposite..
Biosensors & bioelectronics 2019, 128, 76-82.
Conceição EC, Refregier G, Gomes HM, Olessa-Daragon X, Coll F, Ratovonirina NH, Rasolofo-Razanamparany V, Lopes ML, van Soolingen D, Rutaihwa L, Gagneux S, Bollela VR, Suffys PN, Duarte RS, Lima KVB, Sola C
Mycobacterium tuberculosis lineage 1 genetic diversity in Pará, Brazil, suggests common ancestry with east-African isolates potentially linked to historical slave trade..
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2019, 73, 337-341.
Guernier-Cambert V, Diefenbach-Elstob T, Klotoe BJ, Burgess G, Pelowa D, Dowi R, Gula B, McBryde ES, Refrégier G, Rush C, Sola C, Warner J
Diversity of Mycobacterium tuberculosis in the Middle Fly District of Western Province, Papua New Guinea: microbead-based spoligotyping using DNA from Ziehl-Neelsen-stained microscopy preparations..
Scientific reports 2019, 9, 15549.
Barcellos RB, de Almeida IN, da Silva EC, Gomes HM, de Assis Figueredo LJ, Halon ML, Dalla Costa ER, Dos Santos ÍR, Vater MC, Alves S, da Silva Carvalho W, Suffys P, Sola C, de Miranda SS, Rossetti ML, Kritski A
Multicenter evaluation of TB-SPRINT 59-Plex Beamedex®: accuracy and cost analysis..
BMC infectious diseases 2019, 19, 1047.
Anselmo LMP, Conceição EC, Namburete E, Feliciano C, Spindola S, Sola C, Bollela VR
Mycobacterium tuberculosis spoligotypes and drug-resistant characterization from Beira compared to genotypes circulating in Mozambique..
Revista da Sociedade Brasileira de Medicina Tropical 2019, 52, e20190257.
Acosta F, Agapito J, Cabibbe AM, Cáceres T, Sola C, Pérez-Lago L, Abascal E, Herranz M, Meza E, Klotoe B, Muñoz P, Rossolini GM, Bartoloni A, Tortoli E, Cirillo DM, Gotuzzo E, García de Viedma D
Exportation of MDR TB to Europe from Setting with Actively Transmitted Persistent Strains in Peru..
Emerging infectious diseases 2019, 25, 596-598.
Klotoe BJ, Molina-Moya B, Gomes HM, Gomgnimbou MK, Oliveira Suzarte L, Féres Saad MH, Ali S, Dominguez J, Pimkina E, Zholdybayeva E, Sola C, Refrégier G
TB-EFI, a novel 18-Plex microbead-based method for prediction of second-line drugs and ethambutol resistance in Mycobacterium tuberculosis complex..
Journal of microbiological methods 2018, 152, 10-17.
Coll F, Phelan J, Hill-Cawthorne GA, Nair MB, Mallard K, Ali S, Abdallah AM, Alghamdi S, Alsomali M, Ahmed AO, Portelli S, Oppong Y, Alves A, Bessa TB, Campino S, Caws M, Chatterjee A, Crampin AC, Dheda K, Furnham N, Glynn JR, Grandjean L, Minh Ha D, Hasan R, Hasan Z, Hibberd ML, Joloba M, Jones-López EC, Matsumoto T, Miranda A, Moore DJ, Mocillo N, Panaiotov S, Parkhill J, Penha C, Perdigão J, Portugal I, Rchiad Z, Robledo J, Sheen P, Shesha NT, Sirgel FA, Sola C, Oliveira Sousa E, Streicher EM, Helden PV, Viveiros M, Warren RM, McNerney R, Pain A, Clark TG
Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis..
Nature genetics 2018, 50, 307-316.
Coll F, Phelan J, Hill-Cawthorne GA, Nair MB, Mallard K, Ali S, Abdallah AM, Alghamdi S, Alsomali M, Ahmed AO, Portelli S, Oppong Y, Alves A, Bessa TB, Campino S, Caws M, Chatterjee A, Crampin AC, Dheda K, Furnham N, Glynn JR, Grandjean L, Ha DM, Hasan R, Hasan Z, Hibberd ML, Joloba M, Jones-López EC, Matsumoto T, Miranda A, Moore DJ, Mocillo N, Panaiotov S, Parkhill J, Penha C, Perdigão J, Portugal I, Rchiad Z, Robledo J, Sheen P, Shesha NT, Sirgel FA, Sola C, Sousa EO, Streicher EM, Van Helden P, Viveiros M, Warren RM, McNerney R, Pain A, Clark TG
Author Correction: Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis..
Nature genetics 2018, 50, 764.
Molina-Moya B, Agonafir M, Blanco S, Dacombe R, Gomgnimbou MK, Spinasse L, Gomes-Fernandes M, Datiko DG, Edwards T, Cuevas LE, Dominguez J, Sola C
Microbead-based spoligotyping of Mycobacterium tuberculosis from Ziehl-Neelsen-stained microscopy preparations in Ethiopia..
Scientific reports 2018, 8, 3987.
Molina-Moya B, Gomgnimbou MK, Spinasse L, Obasanya J, Oladimeji O, Dacombe R, Edwards T, Daragon XO, Lawson L, Abdurrahman ST, Cuevas LE, Dominguez J, Sola C
Mycobacterium tuberculosis complex genotypes circulating in Nigeria based on spoligotyping obtained from Ziehl-Neelsen stained slides extracted DNA..
PLoS neglected tropical diseases 2018, 12, e0006242.
Molina-Moya B, Abdurrahman ST, Madukaji LI, Gomgnimbou MK, Spinasse L, Gomes-Fernandes M, Gomes HM, Kacimi S, Dacombe R, Bimba JS, Lawson L, Sola C, Cuevas LE, Dominguez J
Genetic characterization of Mycobacterium tuberculosis complex isolates circulating in Abuja, Nigeria..
Infection and drug resistance 2018, 11, 1617-1625.
Exhaustive list of publications
2023
Senelle G, Guyeux C, Refrégier G, Sola C
Towards a better understanding of the long-lasting evolutionary history of Mycobacterium tuberculosis.
Tuberculosis (Edinburgh, Scotland) 2023, 143S, 102374.
Senelle G, Sahal MR, La K, Billard-Pomares T, Marin J, Mougari F, Bridier-Nahmias A, Carbonnelle E, Cambau E, Refrégier G, Guyeux C, Sola C
Towards the reconstruction of a global TB history using a new pipeline "TB-Annotator".
Tuberculosis (Edinburgh, Scotland) 2023, 143S, 102376.
Zein-Eddine R, Hak F, Le Meur A, Genestet C, Dumitrescu O, Guyeux C, Senelle G, Sola C, Refrégier G
The paradoxes of Mycobacterium tuberculosis molecular evolution and consequences for the inference of tuberculosis emergence date.
Tuberculosis (Edinburgh, Scotland) 2023, 143S, 102378.
Pálfi G, Dutour O, Hajdu T, Sola C, Zink A
Paleopathology and evolution of tuberculosis editorial.
Tuberculosis (Edinburgh, Scotland) 2023, 143S, 102428.
Napier G, Couvin D, Refrégier G, Guyeux C, Meehan CJ, Sola C, Campino S, Phelan J, Clark TG
Comparison of in silico predicted Mycobacterium tuberculosis spoligotypes and lineages from whole genome sequencing data.
Scientific Reports 2023, 13, 11368.
Sahal MR, Senelle G, La K, Panda TW, Taura DW, Guyeux C, Cambau E, Sola C
Mycobacterium tuberculosis complex drug-resistance, phylogenetics, and evolution in Nigeria: Comparison with Ghana and Cameroon.
PLoS neglected tropical diseases 2023, 17, e0011619.
2022
Guyeux C, Senelle G, Refrégier G, Bretelle-Establet F, Cambau E, Sola C
Connection between two historical tuberculosis outbreak sites in Japan, Honshu, by a new ancestral Mycobacterium tuberculosis L2 sublineage.
Epidemiology and Infection 2022, 1-25.
Senelle G, Guyeux C, Refrégier G, Sola C
Investigating the Diversity of Tuberculosis Spoligotypes with Dimensionality Reduction and Graph Theory.
Genes 2022, 13, 2328.
2021
Menardo F, Rutaihwa LK, Zwyer M, Borrell S, Comas I, Conceição EC, Coscolla M, Cox H, Joloba M, Dou HY, Feldmann J, Fenner L, Fyfe J, Gao Q, García de Viedma D, Garcia-Basteiro AL, Gygli SM, Hella J, Hiza H, Jugheli L, Kamwela L, Kato-Maeda M, Liu Q, Ley SD, Loiseau C, Mahasirimongkol S, Malla B, Palittapongarnpim P, Rakotosamimanana N, Rasolofo V, Reinhard M, Reither K, Sasamalo M, Silva Duarte R, Sola C, Suffys P, Batista Lima KV, Yeboah-Manu D, Beisel C, Brites D, Gagneux S
Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim..
F1000Research 2021, 10, 60.
Guyeux C, Sola C, Noûs C, Refrégier G
CRISPRbuilder-TB: "CRISPR-builder for tuberculosis". Exhaustive reconstruction of the CRISPR locus in mycobacterium tuberculosis complex using SRA.
PLoS computational biology 2021, 17, e1008500.
2020
Kargarpour Kamakoli M, Farmanfarmaei G, Masoumi M, Khanipour S, Gharibzadeh S, Sola C, Fateh A, Siadat SD, Refregier G, Vaziri F
Prediction of the hidden genotype of mixed infection strains in Iranian tuberculosis patients..
International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases 2020, 95, 22-27.
Klotoe BJ, Kurepina N, Zholdibayeva E, Panaiotov S, Kreiswirth BN, Anthony R, Sola C, Refrégier G
NTF-RINT, a new method for the epidemiological surveillance of MDR Mycobacterium tuberculosis L2/Beijing strains..
Tuberculosis (Edinburgh, Scotland) 2020, 120, 101894.
Refrégier G, Sola C, Guyeux C
Unexpected diversity of CRISPR unveils some evolutionary patterns of repeated sequences in Mycobacterium tuberculosis..
BMC genomics 2020, 21, 841.
Masoud K, Araj GF, Reslan L, Fadlallah S, Wehbe M, Itani L, Avedissian A, Dbaibo G, Saade A, Refrégier G, Sola C, Matar GM
Spoligotyping of Mycobacterium tuberculosis isolates using Luminex®-based method in Lebanon..
Journal of infection in developing countries 2020, 14, 878-885.
Pierre-Audigier C, Talla C, Alame-Emane AK, Audigier B, Grall N, Ruimy R, Andremont A, Cadet-Daniel V, Sola C, Takiff H, Gicquel B, Vray M, Armand-Lefevre L
Tuberculosis trends in a hot-spot region in Paris, France.
The International Journal of Tuberculosis and Lung Disease: The Official Journal of the International Union Against Tuberculosis and Lung Disease 2020, 24, 428-435.
2019
Haddaoui M, Sola C, Raouafi N, Korri-Youssoufi H
E-DNA detection of rpoB gene resistance in Mycobacterium tuberculosis in real samples using Fe(3)O(4)/polypyrrole nanocomposite..
Biosensors & bioelectronics 2019, 128, 76-82.
Conceição EC, Refregier G, Gomes HM, Olessa-Daragon X, Coll F, Ratovonirina NH, Rasolofo-Razanamparany V, Lopes ML, van Soolingen D, Rutaihwa L, Gagneux S, Bollela VR, Suffys PN, Duarte RS, Lima KVB, Sola C
Mycobacterium tuberculosis lineage 1 genetic diversity in Pará, Brazil, suggests common ancestry with east-African isolates potentially linked to historical slave trade..
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2019, 73, 337-341.
Guernier-Cambert V, Diefenbach-Elstob T, Klotoe BJ, Burgess G, Pelowa D, Dowi R, Gula B, McBryde ES, Refrégier G, Rush C, Sola C, Warner J
Diversity of Mycobacterium tuberculosis in the Middle Fly District of Western Province, Papua New Guinea: microbead-based spoligotyping using DNA from Ziehl-Neelsen-stained microscopy preparations..
Scientific reports 2019, 9, 15549.
Barcellos RB, de Almeida IN, da Silva EC, Gomes HM, de Assis Figueredo LJ, Halon ML, Dalla Costa ER, Dos Santos ÍR, Vater MC, Alves S, da Silva Carvalho W, Suffys P, Sola C, de Miranda SS, Rossetti ML, Kritski A
Multicenter evaluation of TB-SPRINT 59-Plex Beamedex®: accuracy and cost analysis..
BMC infectious diseases 2019, 19, 1047.
Anselmo LMP, Conceição EC, Namburete E, Feliciano C, Spindola S, Sola C, Bollela VR
Mycobacterium tuberculosis spoligotypes and drug-resistant characterization from Beira compared to genotypes circulating in Mozambique..
Revista da Sociedade Brasileira de Medicina Tropical 2019, 52, e20190257.
Acosta F, Agapito J, Cabibbe AM, Cáceres T, Sola C, Pérez-Lago L, Abascal E, Herranz M, Meza E, Klotoe B, Muñoz P, Rossolini GM, Bartoloni A, Tortoli E, Cirillo DM, Gotuzzo E, García de Viedma D
Exportation of MDR TB to Europe from Setting with Actively Transmitted Persistent Strains in Peru..
Emerging infectious diseases 2019, 25, 596-598.
2018
Klotoe BJ, Molina-Moya B, Gomes HM, Gomgnimbou MK, Oliveira Suzarte L, Féres Saad MH, Ali S, Dominguez J, Pimkina E, Zholdybayeva E, Sola C, Refrégier G
TB-EFI, a novel 18-Plex microbead-based method for prediction of second-line drugs and ethambutol resistance in Mycobacterium tuberculosis complex..
Journal of microbiological methods 2018, 152, 10-17.
Coll F, Phelan J, Hill-Cawthorne GA, Nair MB, Mallard K, Ali S, Abdallah AM, Alghamdi S, Alsomali M, Ahmed AO, Portelli S, Oppong Y, Alves A, Bessa TB, Campino S, Caws M, Chatterjee A, Crampin AC, Dheda K, Furnham N, Glynn JR, Grandjean L, Minh Ha D, Hasan R, Hasan Z, Hibberd ML, Joloba M, Jones-López EC, Matsumoto T, Miranda A, Moore DJ, Mocillo N, Panaiotov S, Parkhill J, Penha C, Perdigão J, Portugal I, Rchiad Z, Robledo J, Sheen P, Shesha NT, Sirgel FA, Sola C, Oliveira Sousa E, Streicher EM, Helden PV, Viveiros M, Warren RM, McNerney R, Pain A, Clark TG
Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis..
Nature genetics 2018, 50, 307-316.
Coll F, Phelan J, Hill-Cawthorne GA, Nair MB, Mallard K, Ali S, Abdallah AM, Alghamdi S, Alsomali M, Ahmed AO, Portelli S, Oppong Y, Alves A, Bessa TB, Campino S, Caws M, Chatterjee A, Crampin AC, Dheda K, Furnham N, Glynn JR, Grandjean L, Ha DM, Hasan R, Hasan Z, Hibberd ML, Joloba M, Jones-López EC, Matsumoto T, Miranda A, Moore DJ, Mocillo N, Panaiotov S, Parkhill J, Penha C, Perdigão J, Portugal I, Rchiad Z, Robledo J, Sheen P, Shesha NT, Sirgel FA, Sola C, Sousa EO, Streicher EM, Van Helden P, Viveiros M, Warren RM, McNerney R, Pain A, Clark TG
Author Correction: Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis..
Nature genetics 2018, 50, 764.
Molina-Moya B, Agonafir M, Blanco S, Dacombe R, Gomgnimbou MK, Spinasse L, Gomes-Fernandes M, Datiko DG, Edwards T, Cuevas LE, Dominguez J, Sola C
Microbead-based spoligotyping of Mycobacterium tuberculosis from Ziehl-Neelsen-stained microscopy preparations in Ethiopia..
Scientific reports 2018, 8, 3987.
Molina-Moya B, Gomgnimbou MK, Spinasse L, Obasanya J, Oladimeji O, Dacombe R, Edwards T, Daragon XO, Lawson L, Abdurrahman ST, Cuevas LE, Dominguez J, Sola C
Mycobacterium tuberculosis complex genotypes circulating in Nigeria based on spoligotyping obtained from Ziehl-Neelsen stained slides extracted DNA..
PLoS neglected tropical diseases 2018, 12, e0006242.
Molina-Moya B, Abdurrahman ST, Madukaji LI, Gomgnimbou MK, Spinasse L, Gomes-Fernandes M, Gomes HM, Kacimi S, Dacombe R, Bimba JS, Lawson L, Sola C, Cuevas LE, Dominguez J
Genetic characterization of Mycobacterium tuberculosis complex isolates circulating in Abuja, Nigeria..
Infection and drug resistance 2018, 11, 1617-1625.
2017
Conceição EC, Rastogi N, Couvin D, Lopes ML, Furlaneto IP, Gomes HM, Vasconcellos SEG, Suffys PN, Schneider MPC, de Sousa MS, Sola C, de Paula Souza E Guimarães RJ, Duarte RS, Batista Lima KV
Genetic diversity of Mycobacterium tuberculosis from Pará, Brazil, reveals a higher frequency of ancestral strains than previously reported in South America..
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2017, 56, 62-72.
Alame-Emane AK, Pierre-Audigier C, Aboumegone-Biyogo OC, Nzoghe-Mveang A, Cadet-Daniel V, Sola C, Djoba-Siawaya JF, Gicquel B, Takiff HE
Use of GeneXpert Remnants for Drug Resistance Profiling and Molecular Epidemiology of Tuberculosis in Libreville, Gabon..
Journal of clinical microbiology 2017, 55, 2105-2115.
Ratovonirina NH, Rakotosamimanana N, Razafimahatratra SL, Raherison MS, Refrégier G, Sola C, Rakotomanana F, Rasolofo Razanamparany V
Assessment of tuberculosis spatial hotspot areas in Antananarivo, Madagascar, by combining spatial analysis and genotyping..
BMC infectious diseases 2017, 17, 562.
Rasoahanitralisoa R, Rakotosamimanana N, Stucki D, Sola C, Gagneux S, Rasolofo Razanamparany V
Evaluation of spoligotyping, SNPs and customised MIRU-VNTR combination for genotyping Mycobacterium tuberculosis clinical isolates in Madagascar..
PloS one 2017, 12, e0186088.
Dantas NGT, Suffys PN, Carvalho WdS, Gomes HM, Almeida INd, Figueiredo LJdA, Gonçalves AD, Gomgnimbou MK, Refregier G, Sola C, Miranda SSd
Correlation between the BACTEC MGIT 960 culture system with Genotype MTBDRplus and TB-SPRINT in multidrug resistant Mycobacterium tuberculosis clinical isolates from Brazil..
Memorias do Instituto Oswaldo Cruz 2017, 112, 769-774.
Molina-Moya B, Gomgnimbou MK, Lafoz C, Lacoma A, Prat C, Refrégier G, Samper S, Dominguez J, Sola C
Molecular Characterization of Mycobacterium tuberculosis Strains with TB-SPRINT..
The American journal of tropical medicine and hygiene 2017, 97, 806-809.
2016
Refrégier G, Abadia E, Matsumoto T, Ano H, Takashima T, Tsuyuguchi I, Aktas E, Cömert F, Gomgnimbou MK, Panaiotov S, Phelan J, Coll F, McNerney R, Pain A, Clark TG, Sola C
Turkish and Japanese Mycobacterium tuberculosis sublineages share a remote common ancestor..
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016, 45, 461-473.
Yasmin M, Le Moullec S, Siddiqui RT, De Beer J, Sola C, Refrégier G
Quick and cheap MIRU-VNTR typing of Mycobacterium tuberculosis species complex using duplex PCR..
Tuberculosis (Edinburgh, Scotland) 2016, 101, 160-163.
2015
Sola C, Abadia E, Le Hello S, Weill FX
High-Throughput CRISPR Typing of Mycobacterium tuberculosis Complex and Salmonella enterica Serotype Typhimurium..
Methods in molecular biology (Clifton, N.J.) 2015, 1311, 91-109.
Lösch S, Kim MR, Dutour O, Courtaud P, Maixner F, Romon T, Sola C, Zink A
Evidence for tuberculosis in 18th/19th century slaves in Anse Sainte-Marguerite (Guadeloupe - French Western Indies)..
Tuberculosis (Edinburgh, Scotland) 2015, 95 Suppl 1, S65-68.
Pósa A, Maixner F, Sola C, Bereczki Z, Molnár E, Masson M, Lovász G, Spekker O, Wicker E, Perrin P, Dutour O, Zink A, Pálfi G
Tuberculosis infection in a late-medieval Hungarian population..
Tuberculosis (Edinburgh, Scotland) 2015, 95 Suppl 1, S60-64.
Pósa A, Maixner F, Mende BG, Köhler K, Osztás A, Sola C, Dutour O, Masson M, Molnár E, Pálfi G, Zink A
Tuberculosis in Late Neolithic-Early Copper Age human skeletal remains from Hungary..
Tuberculosis (Edinburgh, Scotland) 2015, 95 Suppl 1, S18-22.
Sola C
Clustured regularly interspersed short palindromic repeats (CRISPR) genetic diversity studies as a mean to reconstruct the evolution of the Mycobacterium tuberculosis complex..
Tuberculosis (Edinburgh, Scotland) 2015, 95 Suppl 1, S159-166.
Pálfi G, Dutour O, Perrin P, Sola C, Zink A
Tuberculosis in evolution..
Tuberculosis (Edinburgh, Scotland) 2015, 95 Suppl 1, S1-3.
Miodek A, Mejri N, Gomgnimbou M, Sola C, Korri-Youssoufi H
E-DNA sensor of Mycobacterium tuberculosis based on electrochemical assembly of nanomaterials (MWCNTs/PPy/PAMAM)..
Analytical chemistry 2015, 87, 9257-9264.
Obasanya J, Abdurrahman ST, Oladimeji O, Lawson L, Dacombe R, Chukwueme N, Abiola T, Mustapha G, Sola C, Dominguez J, Cuevas LE
Tuberculosis case detection in Nigeria, the unfinished agenda..
Tropical medicine & international health : TM & IH 2015, 20, 1396-1402.
Brossier F, Sougakoff W, Bernard C, Petrou M, Adeyema K, Pham A, Amy de la Breteque D, Vallet M, Jarlier V, Sola C, Veziris N
Molecular Analysis of the embCAB Locus and embR Gene Involved in Ethambutol Resistance in Clinical Isolates of Mycobacterium tuberculosis in France..
Antimicrobial agents and chemotherapy 2015, 59, 4800-4808.
Brossier F, Sola C, Bernard C, Jarlier V, Veziris N, Sougakoff W
Characterization of a Clone of Mycobacterium tuberculosis Clinical Isolates with Mutations in KatG (A110V), EthA (Q269STOP), and the inhA Promoter (-15C→T)..
Journal of clinical microbiology 2015, 53, 3104.
Dantas NGT, Suffys PN, Carvalho WdS, Gomes HM, de Almeida IN, de Assis LJ, Augusto CJ, Gomgnimbou MK, Refregier G, Sola C, de Miranda SS
Genetic diversity and molecular epidemiology of multidrug-resistant Mycobacterium tuberculosis in Minas Gerais State, Brazil..
BMC infectious diseases 2015, 15, 306.
Azé J, Sola C, Zhang J, Lafosse-Marin F, Yasmin M, Siddiqui R, Kremer K, van Soolingen D, Refrégier G
Genomics and Machine Learning for Taxonomy Consensus: The Mycobacterium tuberculosis Complex Paradigm..
PloS one 2015, 10, e0130912.
2014
Huber FD, Sánchez A, Gomes HM, Vasconcellos S, Massari V, Barreto A, Cesconi V, de Almeida Machado SM, Gomgnimbou MK, Sola C, Larouzé B, Suffys PN, Saad MHF
Insights into the population structure of Mycobacterium tuberculosis using spoligotyping and RDRio in a southeastern Brazilian prison unit..
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2014, 26, 194-202.
Yasmin M, Gomgnimbou MK, Siddiqui RT, Refrégier G, Sola C
Multi-drug resistant Mycobacterium tuberculosis complex genetic diversity and clues on recent transmission in Punjab, Pakistan..
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2014, 27, 6-14.
Gomgnimbou MK, Ginevra C, Peron-Cane C, Versapuech M, Refrégier G, Jacotin N, Sola C, Jarraud S
Validation of a microbead-based format for spoligotyping of Legionella pneumophila..
Journal of clinical microbiology 2014, 52, 2410-2415.
Sengstake S, Bablishvili N, Schuitema A, Bzekalava N, Abadia E, de Beer J, Tadumadze N, Akhalaia M, Tuin K, Tukvadze N, Aspindzelashvili R, Bachiyska E, Panaiotov S, Sola C, van Soolingen D, Klatser P, Anthony R, Bergval I
Optimizing multiplex SNP-based data analysis for genotyping of Mycobacterium tuberculosis isolates..
BMC genomics 2014, 15, 572.
Bonura C, Gomgnimbou MK, Refrégier G, Aleo A, Fasciana T, Giammanco A, Sola C, Mammina C
Molecular epidemiology of tuberculosis in Sicily, Italy: what has changed after a decade?.
BMC infectious diseases 2014, 14, 602.
de Freitas FAD, Bernardo V, Gomgnimbou MK, Sola C, Siqueira HR, Pereira MAS, Fandinho FCO, Gomes HM, Araújo MEI, Suffys PN, Marques EA, Albano RM
Multidrug resistant Mycobacterium tuberculosis: a retrospective katG and rpoB mutation profile analysis in isolates from a reference center in Brazil..
PloS one 2014, 9, e104100.
Vasconcellos SEG, Acosta CC, Gomes LL, Conceição EC, Lima KV, de Araujo MI, Leite MdL, Tannure F, Caldas PCdS, Gomes HM, Santos AR, Gomgnimbou MK, Sola C, Couvin D, Rastogi N, Boechat N, Suffys PN
Strain classification of Mycobacterium tuberculosis isolates in Brazil based on genotypes obtained by spoligotyping, mycobacterial interspersed repetitive unit typing and the presence of large sequence and single nucleotide polymorphism..
PloS one 2014, 9, e107747.
Panaiotov S, Bachiyska E, Yordanova S, Atanasova Y, Brankova N, Levterova V, Sengstake S, Anthony R, Bergval I, Sola C, Kantardjiev T
Beijing lineage of MDR Mycobacterium tuberculosis in Bulgaria, 2007-2011..
Emerging infectious diseases 2014, 20, 1899-1901.
2013
Gomgnimbou MK, Hernández-Neuta I, Panaiotov S, Bachiyska E, Palomino JC, Martin A, del Portillo P, Refregier G, Sola C
Tuberculosis-spoligo-rifampin-isoniazid typing: an all-in-one assay technique for surveillance and control of multidrug-resistant tuberculosis on Luminex devices..
Journal of clinical microbiology 2013, 51, 3527-3534.
2012
Gomes HM, Elias AR, Oelemann MAC, Pereira MAdS, Montes FFO, Marsico AG, Kritski AL, Filho LdA, Caldas PC, Possuelo LG, Cafrune P, Rossetti ML, Lucena N, Saad MHF, Cavalcanti HR, Leite CQF, de Brito RC, Lopes ML, Lima K, Souza M, Trindade RdC, Zozio T, Sola C, Rastogi N, Suffys PN
Spoligotypes of Mycobacterium tuberculosis complex isolates from patients residents of 11 states of Brazil..
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2012, 12, 649-656.
Demay C, Liens B, Burguière T, Hill V, Couvin D, Millet J, Mokrousov I, Sola C, Zozio T, Rastogi N
SITVITWEB--a publicly available international multimarker database for studying Mycobacterium tuberculosis genetic diversity and molecular epidemiology..
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2012, 12, 755-766.
Gomgnimbou MK, Abadia E, Zhang J, Refrégier G, Panaiotov S, Bachiyska E, Sola C
"Spoligoriftyping," a dual-priming-oligonucleotide-based direct-hybridization assay for tuberculosis control with a multianalyte microbead-based hybridization system..
Journal of clinical microbiology 2012, 50, 3172-3179.
Fabre L, Zhang J, Guigon G, Le Hello S, Guibert V, Accou-Demartin M, de Romans S, Lim C, Roux C, Passet V, Diancourt L, Guibourdenche M, Issenhuth-Jeanjean S, Achtman M, Brisse S, Sola C, Weill FX
CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections..
PloS one 2012, 7, e36995.
Lawson L, Zhang J, Gomgnimbou MK, Abdurrahman ST, Le Moullec S, Mohamed F, Uzoewulu GN, Sogaolu OM, Goh KS, Emenyonu N, Refrégier G, Cuevas LE, Sola C
A molecular epidemiological and genetic diversity study of tuberculosis in Ibadan, Nnewi and Abuja, Nigeria..
PloS one 2012, 7, e38409.
Bergval I, Sengstake S, Brankova N, Levterova V, Abadía E, Tadumaze N, Bablishvili N, Akhalaia M, Tuin K, Schuitema A, Panaiotov S, Bachiyska E, Kantardjiev T, de Zwaan R, Schürch A, van Soolingen D, van 't Hoog A, Cobelens F, Aspindzelashvili R, Sola C, Klatser P, Anthony R
Combined species identification, genotyping, and drug resistance detection of Mycobacterium tuberculosis cultures by MLPA on a bead-based array..
PloS one 2012, 7, e43240.
Gomgnimbou MK, Refrégier G, Diagbouga SP, Adama S, Kaboré A, Ouiminga A, Sola C
Spoligotyping of Mycobacterium africanum, Burkina Faso..
Emerging infectious diseases 2012, 18, 117-119.
2011
Borile C, Labarre M, Franz S, Sola C, Refrégier G
Using affinity propagation for identifying subspecies among clonal organisms: lessons from M. tuberculosis..
BMC bioinformatics 2011, 12, 224.
Abadia E, Zhang J, Ritacco V, Kremer K, Ruimy R, Rigouts L, Gomes HM, Elias AR, Fauville-Dufaux M, Stoffels K, Rasolofo-Razanamparany V, Garcia de Viedma D, Herranz M, Al-Hajoj S, Rastogi N, Garzelli C, Tortoli E, Suffys PN, van Soolingen D, Refrégier G, Sola C
The use of microbead-based spoligotyping for Mycobacterium tuberculosis complex to evaluate the quality of the conventional method: providing guidelines for Quality Assurance when working on membranes..
BMC infectious diseases 2011, 11, 110.
Zhang J, Heng S, Le Moullec S, Refregier G, Gicquel B, Sola C, Guillard B
A first assessment of the genetic diversity of Mycobacterium tuberculosis complex in Cambodia..
BMC infectious diseases 2011, 11, 42.
2010
Abadia E, Zhang J, dos Vultos T, Ritacco V, Kremer K, Aktas E, Matsumoto T, Refregier G, van Soolingen D, Gicquel B, Sola C
Resolving lineage assignation on Mycobacterium tuberculosis clinical isolates classified by spoligotyping with a new high-throughput 3R SNPs based method..
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2010, 10, 1066-1074.
Zhang J, Abadia E, Refregier G, Tafaj S, Boschiroli ML, Guillard B, Andremont A, Ruimy R, Sola C
Mycobacterium tuberculosis complex CRISPR genotyping: improving efficiency, throughput and discriminative power of 'spoligotyping' with new spacers and a microbead-based hybridization assay..
Journal of medical microbiology 2010, 59, 285-294.
Valcheva V, Mokrousov I, Panaiotov S, Bachiiska E, Zozio T, Sola C, Markova N, Rastogi N
Bulgarian specificity and controversial phylogeography of Mycobacterium tuberculosis spoligotype ST 125__BGR..
FEMS immunology and medical microbiology 2010, 59, 90-99.
2009
Tafaj S, Zhang J, Hauck Y, Pourcel C, Hafizi H, Zoraqi G, Sola C
First insight into genetic diversity of the Mycobacterium tuberculosis complex in Albania obtained by multilocus variable-number tandem-repeat analysis and spoligotyping reveals the presence of beijing multidrug-resistant isolates..
Journal of clinical microbiology 2009, 47, 1581-1584.
Otlu B, Durmaz R, Gunal S, Sola C, Zozio T, Rastogi N
Beijing/W and major spoligotype families of Mycobacterium tuberculosis strains isolated from tuberculosis patients in Eastern Turkey..
The new microbiologica 2009, 32, 255-263.
2008
Chuang PC, Liu H, Sola C, Chen YMA, Jou R
Spoligotypes of Mycobacterium tuberculosis isolates of a high tuberculosis burden aboriginal township in Taiwan..
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2008, 8, 553-557.
Gibson AL, Huard RC, Gey van Pittius NC, Lazzarini LCO, Driscoll J, Kurepina N, Zozio T, Sola C, Spindola SM, Kritski AL, Fitzgerald D, Kremer K, Mardassi H, Chitale P, Brinkworth J, Garcia de Viedma D, Gicquel B, Pape JW, van Soolingen D, Kreiswirth BN, Warren RM, van Helden PD, Rastogi N, Suffys PN, Lapa e Silva J, Ho JL
Application of sensitive and specific molecular methods to uncover global dissemination of the major RDRio Sublineage of the Latin American-Mediterranean Mycobacterium tuberculosis spoligotype family..
Journal of clinical microbiology 2008, 46, 1259-1267.
Guernier V, Sola C, Brudey K, Guégan JF, Rastogi N
Use of cluster-graphs from spoligotyping data to study genotype similarities and a comparison of three indices to quantify recent tuberculosis transmission among culture positive cases in French Guiana during a eight year period..
BMC infectious diseases 2008, 8, 46.
Dos Vultos T, Mestre O, Rauzier J, Golec M, Rastogi N, Rasolofo V, Tonjum T, Sola C, Matic I, Gicquel B
Evolution and diversity of clonal bacteria: the paradigm of Mycobacterium tuberculosis..
PloS one 2008, 3, e1538.
2007
Singh UB, Arora J, Suresh N, Pant H, Rana T, Sola C, Rastogi N, Pande JN
Genetic biodiversity of Mycobacterium tuberculosis isolates from patients with pulmonary tuberculosis in India..
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2007, 7, 441-448.
Durmaz R, Zozio T, Gunal S, Yaman A, Cavusoglu C, Guney C, Sola C, Rastogi N
Genetic diversity and major spoligotype families of drug-resistant Mycobacterium tuberculosis clinical isolates from different regions of Turkey..
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2007, 7, 513-519.
Ködmön C, Niemann S, Gutierrez MC, Sola C, Rastogi N, Lukács J, Somoskövi A
Molecular clues of a microepidemy among homeless tuberculosis patients in Budapest due to a new and local Mycobacterium tuberculosis clade..
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2007, 7, 632-635.
Lari N, Rindi L, Bonanni D, Rastogi N, Sola C, Tortoli E, Garzelli C
Three-year longitudinal study of genotypes of Mycobacterium tuberculosis isolates in Tuscany, Italy..
Journal of clinical microbiology 2007, 45, 1851-1857.
Millet J, Miyagi-Shiohira C, Yamane N, Sola C, Rastogi N
Assessment of mycobacterial interspersed repetitive unit-QUB markers to further discriminate the Beijing genotype in a population-based study of the genetic diversity of Mycobacterium tuberculosis clinical isolates from Okinawa, Ryukyu Islands, Japan..
Journal of clinical microbiology 2007, 45, 3606-3615.
Rahim Z, Zaman K, van der Zanden AGM, Möllers MJ, van Soolingen D, Raqib R, Zaman K, Begum V, Rigouts L, Portaels F, Rastogi N, Sola C
Assessment of population structure and major circulating phylogeographical clades of Mycobacterium tuberculosis complex in Bangladesh suggests a high prevalence of a specific subclade of ancient M. tuberculosis genotypes..
Journal of clinical microbiology 2007, 45, 3791-3794.
Al-Hajoj SAM, Zozio T, Al-Rabiah F, Mohammad V, Al-Nasser M, Sola C, Rastogi N
First insight into the population structure of Mycobacterium tuberculosis in Saudi Arabia..
Journal of clinical microbiology 2007, 45, 2467-2473.
Kibiki GS, Mulder B, Dolmans WMV, de Beer JL, Boeree M, Sam N, van Soolingen D, Sola C, van der Zanden AGM
M. tuberculosis genotypic diversity and drug susceptibility pattern in HIV-infected and non-HIV-infected patients in northern Tanzania..
BMC microbiology 2007, 7, 51.
2006
Goh KS, Fabre M, Huard RC, Schmid S, Sola C, Rastogi N
Study of the gyrB gene polymorphism as a tool to differentiate among Mycobacterium tuberculosis complex subspecies further underlines the older evolutionary age of 'Mycobacterium canettii'..
Molecular and cellular probes 2006, 20, 182-190.
Suresh N, Singh UB, Arora J, Pant H, Seth P, Sola C, Rastogi N, Samantaray JC, Pande JN
rpoB gene sequencing and spoligotyping of multidrug-resistant Mycobacterium tuberculosis isolates from India..
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2006, 6, 474-483.
Rasolofo Razanamparany V, Quirin R, Rapaoliarijaona A, Rakotoaritahina H, Vololonirina EJ, Rasolonavalona T, Ferdinand S, Sola C, Rastogi N, Ramarokoto H, Chanteau S
Usefulness of restriction fragment length polymorphism and spoligotyping for epidemiological studies of Mycobacterium bovis in Madagascar: description of new genotypes..
Veterinary microbiology 2006, 114, 115-122.
Joseph P, Severe P, Ferdinand S, Goh KS, Sola C, Haas DW, Johnson WD, Rastogi N, Pape JW, Fitzgerald DW
Multidrug-resistant tuberculosis at an HIV testing center in Haiti..
AIDS (London, England) 2006, 20, 415-418.
Filliol I, Motiwala AS, Cavatore M, Qi W, Hazbón MH, Bobadilla del Valle M, Fyfe J, García-García L, Rastogi N, Sola C, Zozio T, Guerrero MI, León CI, Crabtree J, Angiuoli S, Eisenach KD, Durmaz R, Joloba ML, Rendón A, Sifuentes-Osornio J, Ponce de León A, Cave MD, Fleischmann R, Whittam TS, Alland D
Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set..
Journal of bacteriology 2006, 188, 759-772.
Supply P, Allix C, Lesjean S, Cardoso-Oelemann M, Rüsch-Gerdes S, Willery E, Savine E, de Haas P, van Deutekom H, Roring S, Bifani P, Kurepina N, Kreiswirth B, Sola C, Rastogi N, Vatin V, Gutierrez MC, Fauville M, Niemann S, Skuce R, Kremer K, Locht C, van Soolingen D
Proposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosis..
Journal of clinical microbiology 2006, 44, 4498-4510.
Brudey K, Filliol I, Ferdinand S, Guernier V, Duval P, Maubert B, Sola C, Rastogi N
Long-term population-based genotyping study of Mycobacterium tuberculosis complex isolates in the French departments of the Americas..
Journal of clinical microbiology 2006, 44, 183-191.
Karboul A, Gey van Pittius NC, Namouchi A, Vincent V, Sola C, Rastogi N, Suffys P, Fabre M, Cataldi A, Huard RC, Kurepina N, Kreiswirth B, Ho JL, Gutierrez MC, Mardassi H
Insights into the evolutionary history of tubercle bacilli as disclosed by genetic rearrangements within a PE_PGRS duplicated gene pair..
BMC evolutionary biology 2006, 6, 107.
Brudey K, Driscoll JR, Rigouts L, Prodinger WM, Gori A, Al-Hajoj SA, Allix C, Aristimuño L, Arora J, Baumanis V, Binder L, Cafrune P, Cataldi A, Cheong S, Diel R, Ellermeier C, Evans JT, Fauville-Dufaux M, Ferdinand S, Garcia de Viedma D, Garzelli C, Gazzola L, Gomes HM, Guttierez MC, Hawkey PM, van Helden PD, Kadival GV, Kreiswirth BN, Kremer K, Kubin M, Kulkarni SP, Liens B, Lillebaek T, Ho ML, Martin C, Martin C, Mokrousov I, Narvskaïa O, Ngeow YF, Naumann L, Niemann S, Parwati I, Rahim Z, Rasolofo-Razanamparany V, Rasolonavalona T, Rossetti ML, Rüsch-Gerdes S, Sajduda A, Samper S, Shemyakin IG, Singh UB, Somoskovi A, Skuce RA, van Soolingen D, Streicher EM, Suffys PN, Tortoli E, Tracevska T, Vincent V, Victor TC, Warren RM, Yap SF, Zaman K, Portaels F, Rastogi N, Sola C
Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology..
BMC microbiology 2006, 6, 23.
Aristimuño L, Armengol R, Cebollada A, España M, Guilarte A, Lafoz C, Lezcano MA, Revillo MJ, Martín C, Ramírez C, Rastogi N, Rojas J, de Salas AV, Sola C, Samper S
Molecular characterisation of Mycobacterium tuberculosis isolates in the First National Survey of Anti-tuberculosis Drug Resistance from Venezuela..
BMC microbiology 2006, 6, 90.
2005
Gori A, Esposti AD, Bandera A, Mezzetti M, Sola C, Marchetti G, Ferrario G, Salerno F, Goyal M, Diaz R, Gazzola L, Codecasa L, Penati V, Rastogi N, Moroni M, Franzetti F
Comparison between spoligotyping and IS6110 restriction fragment length polymorphisms in molecular genotyping analysis of Mycobacterium tuberculosis strains..
Molecular and cellular probes 2005, 19, 236-244.
Sola C, Ferdinand S, Sechi LA, Zanetti S, Martial D, Mammina C, Nastasi A, Fadda G, Rastogi N
Mycobacterium tuberculosis molecular evolution in western Mediterranean Islands of Sicily and Sardinia..
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2005, 5, 145-156.
Ferdinand S, Sola C, Chanteau S, Ramarokoto H, Rasolonavalona T, Rasolofo-Razanamparany V, Rastogi N
A study of spoligotyping-defined Mycobacterium tuberculosis clades in relation to the origin of peopling and the demographic history in Madagascar..
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2005, 5, 340-348.
Kulkarni S, Sola C, Filliol I, Rastogi N, Kadival G
Spoligotyping of Mycobacterium tuberculosis isolates from patients with pulmonary tuberculosis in Mumbai, India..
Research in microbiology 2005, 156, 588-596.
Nicol MP, Sola C, February B, Rastogi N, Steyn L, Wilkinson RJ
Distribution of strain families of Mycobacterium tuberculosis causing pulmonary and extrapulmonary disease in hospitalized children in Cape Town, South Africa..
Journal of clinical microbiology 2005, 43, 5779-5781.
Lari N, Rindi L, Sola C, Bonanni D, Rastogi N, Tortoli E, Garzelli C
Genetic diversity, determined on the basis of katG463 and gyrA95 polymorphisms, Spoligotyping, and IS6110 typing, of Mycobacterium tuberculosis complex isolates from Italy..
Journal of clinical microbiology 2005, 43, 1617-1624.
García de Viedma D, Bouza E, Rastogi N, Sola C
Analysis of Mycobacterium tuberculosis genotypes in Madrid and identification of two new families specific to Spain-related settings..
Journal of clinical microbiology 2005, 43, 1797-1806.
Goh KS, Rastogi N, Berchel M, Huard RC, Sola C
Molecular evolutionary history of tubercle bacilli assessed by study of the polymorphic nucleotide within the nitrate reductase (narGHJI) operon promoter..
Journal of clinical microbiology 2005, 43, 4010-4014.
Zozio T, Allix C, Gunal S, Saribas Z, Alp A, Durmaz R, Fauville-Dufaux M, Rastogi N, Sola C
Genotyping of Mycobacterium tuberculosis clinical isolates in two cities of Turkey: description of a new family of genotypes that is phylogeographically specific for Asia Minor..
BMC microbiology 2005, 5, 44.
2004
Ferdinand S, Legrand E, Goh KS, Berchel M, Mazzarelli G, Sola C, Tortoli E, Rastogi N
Taxonomic and phylogenetic status of non-tuberculous mycobacteria in a Caribbean setting..
Molecular and cellular probes 2004, 18, 399-408.
Duchêne V, Ferdinand S, Filliol I, Guégan JF, Rastogi N, Sola C
Phylogenetic reconstruction of Mycobacterium tuberculosis within four settings of the Caribbean region: tree comparative analyse and first appraisal on their phylogeography..
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2004, 4, 5-14.
Ferdinand S, Valétudie G, Sola C, Rastogi N
Data mining of Mycobacterium tuberculosis complex genotyping results using mycobacterial interspersed repetitive units validates the clonal structure of spoligotyping-defined families..
Research in microbiology 2004, 155, 647-654.
Easterbrook PJ, Gibson A, Murad S, Lamprecht D, Ives N, Ferguson A, Lowe O, Mason P, Ndudzo A, Taziwa A, Makombe R, Mbengeranwa L, Sola C, Rastogi N, Drobniewski F
High rates of clustering of strains causing tuberculosis in Harare, Zimbabwe: a molecular epidemiological study..
Journal of clinical microbiology 2004, 42, 4536-4544.
Brudey K, Gutierrez MC, Vincent V, Parsons LM, Salfinger M, Rastogi N, Sola C
Mycobacterium africanum genotyping using novel spacer oligonucleotides in the direct repeat locus..
Journal of clinical microbiology 2004, 42, 5053-5057.
Brudey K, Gordon M, Moström P, Svensson L, Jonsson B, Sola C, Ridell M, Rastogi N
Molecular epidemiology of Mycobacterium tuberculosis in western Sweden..
Journal of clinical microbiology 2004, 42, 3046-3051.
Singh UB, Suresh N, Bhanu NV, Arora J, Pant H, Sinha S, Aggarwal RC, Singh S, Pande JN, Sola C, Rastogi N, Seth P
Predominant tuberculosis spoligotypes, Delhi, India..
Emerging infectious diseases 2004, 10, 1138-1142.
2003
Sola C, Filliol I, Legrand E, Lesjean S, Locht C, Supply P, Rastogi N
Genotyping of the Mycobacterium tuberculosis complex using MIRUs: association with VNTR and spoligotyping for molecular epidemiology and evolutionary genetics..
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2003, 3, 125-133.
Dale JW, Al-Ghusein H, Al-Hashmi S, Butcher P, Dickens AL, Drobniewski F, Forbes KJ, Gillespie SH, Lamprecht D, McHugh TD, Pitman R, Rastogi N, Smith AT, Sola C, Yesilkaya H
Evolutionary relationships among strains of Mycobacterium tuberculosis with few copies of IS6110..
Journal of bacteriology 2003, 185, 2555-2562.
Zink AR, Sola C, Reischl U, Grabner W, Rastogi N, Wolf H, Nerlich AG
Characterization of Mycobacterium tuberculosis complex DNAs from Egyptian mummies by spoligotyping..
Journal of clinical microbiology 2003, 41, 359-367.
Ferdinand S, Sola C, Verdol B, Legrand E, Goh KS, Berchel M, Aubéry A, Timothée M, Joseph P, Pape JW, Rastogi N
Molecular characterization and drug resistance patterns of strains of Mycobacterium tuberculosis isolated from patients in an AIDS counseling center in Port-au-Prince, Haiti: a 1-year study..
Journal of clinical microbiology 2003, 41, 694-702.
Sola C, Rastogi N, Gutierrez MC, Vincent V, Brosch R, Parsons L
Is Mycobacterium africanum subtype II (Uganda I and Uganda II) a genetically well-defined subspecies of the Mycobacterium tuberculosis complex?.
Journal of clinical microbiology 2003, 41, 1345-6; author reply 1346-1348.
Puustinen K, Marjamäki M, Rastogi N, Sola C, Filliol I, Ruutu P, Holmström P, Viljanen MK, Soini H
Characterization of Finnish Mycobacterium tuberculosis isolates by spoligotyping..
Journal of clinical microbiology 2003, 41, 1525-1528.
Filliol I, Driscoll JR, van Soolingen D, Kreiswirth BN, Kremer K, Valétudie G, Dang DA, Barlow R, Banerjee D, Bifani PJ, Brudey K, Cataldi A, Cooksey RC, Cousins DV, Dale JW, Dellagostin OA, Drobniewski F, Engelmann G, Ferdinand S, Gascoyne-Binzi D, Gordon M, Gutierrez MC, Haas WH, Heersma H, Kassa-Kelembho E, Ho ML, Makristathis A, Mammina C, Martin G, Moström P, Mokrousov I, Narbonne V, Narvskaya O, Nastasi A, Niobe-Eyangoh SN, Pape JW, Rasolofo-Razanamparany V, Ridell M, Rossetti ML, Stauffer F, Suffys PN, Takiff H, Texier-Maugein J, Vincent V, de Waard JH, Sola C, Rastogi N
Snapshot of moving and expanding clones of Mycobacterium tuberculosis and their global distribution assessed by spoligotyping in an international study..
Journal of clinical microbiology 2003, 41, 1963-1970.
Niobe-Eyangoh SN, Kuaban C, Sorlin P, Cunin P, Thonnon J, Sola C, Rastogi N, Vincent V, Gutierrez MC
Genetic biodiversity of Mycobacterium tuberculosis complex strains from patients with pulmonary tuberculosis in Cameroon..
Journal of clinical microbiology 2003, 41, 2547-2553.
2002
Filliol I, Ferdinand S, Sola C, Thonnon J, Rastogi N
Spoligotyping and IS6110-RFLP typing of Mycobacterium tuberculosis from French Guiana: a comparison of results with international databases underlines interregional transmission from neighboring countries..
Research in microbiology 2002, 153, 81-88.
Mokrousov I, Filliol I, Legrand E, Sola C, Otten T, Vyshnevskaya E, Limeschenko E, Vyshnevskiy B, Narvskaya O, Rastogi N
Molecular characterization of multiple-drug-resistant Mycobacterium tuberculosis isolates from northwestern Russia and analysis of rifampin resistance using RNA/RNA mismatch analysis as compared to the line probe assay and sequencing of the rpoB gene..
Research in microbiology 2002, 153, 213-219.
Filliol I, Driscoll JR, Van Soolingen D, Kreiswirth BN, Kremer K, Valétudie G, Anh DD, Barlow R, Banerjee D, Bifani PJ, Brudey K, Cataldi A, Cooksey RC, Cousins DV, Dale JW, Dellagostin OA, Drobniewski F, Engelmann G, Ferdinand S, Gascoyne-Binzi D, Gordon M, Gutierrez MC, Haas WH, Heersma H, Källenius G, Kassa-Kelembho E, Koivula T, Ly HM, Makristathis A, Mammina C, Martin G, Moström P, Mokrousov I, Narbonne V, Narvskaya O, Nastasi A, Niobe-Eyangoh SN, Pape JW, Rasolofo-Razanamparany V, Ridell M, Rossetti ML, Stauffer F, Suffys PN, Takiff H, Texier-Maugein J, Vincent V, De Waard JH, Sola C, Rastogi N
Global distribution of Mycobacterium tuberculosis spoligotypes..
Emerging infectious diseases 2002, 8, 1347-1349.
