Members

  First name: Erick
  Last name: Denamur
  Function: Director
  Position: Professor
  Email: erick.denamur
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inserm.fr

Research interest


   My goal is to bring fundamental evolutionary approach in medical research. After an interest in human genetic diseases, especially cystic fibrosis, I now focus on the infectious diseases where I try to understand, in an ecological and evolutionary perspective, how bacteria become pathogenic and resistant. The bulk of my work is based on Escherichia coli, which is a natural inhabitant of the gut flora of vertebrates, including humans, but also frequently involved in a broad spectrum of intestinal (diarrhoea) and extra intestinal (urinary tract infection, septicemia, meningitis) diseases. The used approach is to reconstruct the evolutionary scenario of bacterial adaptation, including virulence and resistance, using numerous natural isolates from various origins.


Education

Degree

1991: Ph. D. in Biological Chemistry and Molecular Biology, University Paris Sud
1986: M. D. Amiens Medical School, Picardie University
1981: Second cycle of medical studies, University Paris Descartes

Academic positions

2000-present: Professor in Biochemistry and Molecular Biology, Medical School, Paris Diderot University
1994-2000: Associate Professor in Genetics, Medical School, Paris Diderot University
1989-1991: Assistant Professor in Biochemistry and Molecular Biology, Medical School, Paris Diderot University
1988-1989: Assistant Professor in Bacteriology, Amiens Medical School, Picardie University
1982-1988: Resident, University Hospital of Amiens

Research training (post doctoral)

2014-present: Director of IAME research unit
2003-2013: Director of the INSERM unit E0339 « Ecology and evolution of microorganisms », then U722 (January 2005), Paris Diderot Medical School, Paris
1994-2002: Head of the team « Cystic fibrosis » then head of the team « Genetic variability and evolution » at the INSERM unit 120 then 458, Robert Debré hospital, Paris
1993-1994: Researcher at the INSERM unit 120, Robert Debré hospital, Paris
1991-1993: Visiting Fellow, Department of Laboratory Medicine, Howard Hughes Medical Institute, University of California, San Francisco (Pr Y.W. Kan)

List of the main publications

Bleibtreu A, Clermont O, Darlu P, Glodt J, Branger C, Picard B, Denamur E
The rpoS gene is predominantly inactivated during laboratory storage and undergoes source-sink evolution in Escherichia coli species.
Journal of Bacteriology 2014, 196, 4276-4284.

Lefort A, Panhard X, Clermont O, Woerther PL, Branger C, Mentré F, Fantin B, Wolff M, Denamur E, CG
Host factors and portal of entry outweigh bacterial determinants to predict the severity of Escherichia coli bacteremia.
Journal of Clinical Microbiology 2011, 49, 777-783.

Le Gall T, Darlu P, Escobar-Páramo P, Picard B, Denamur E
Selection-driven transcriptome polymorphism in Escherichia coli/Shigella species.
Genome Research 2005, 15, 260-268.

Bjedov I, Tenaillon O, Gérard B, Souza V, Denamur E, Radman M, Taddei F, Matic I
Stress-induced mutagenesis in bacteria.
Science (New York, N.Y.) 2003, 300, 1404-1409.

Denamur E, Lecointre G, Darlu P, Tenaillon O, Acquaviva C, Sayada C, Sunjevaric I, Rothstein R, Elion J, Taddei F, Radman M, Matic I
Evolutionary implications of the frequent horizontal transfer of mismatch repair genes.
Cell 2000, 103, 711-721.

Picard B, Garcia JS, Gouriou S, Duriez P, Brahimi N, Bingen E, Elion J, Denamur E
The link between phylogeny and virulence in Escherichia coli extraintestinal infection.
Infection and Immunity 1999, 67, 546-553.


Exhaustive list of publications

2020


de Lastours V, Poirel L, Huttner B, Harbarth S, Denamur E, Nordmann P
Emergence of colistin-resistant Gram-negative Enterobacterales in the gut of patients receiving oral colistin and neomycin decontamination.
The Journal of Infection 2020

Tanaka S, Genève C, Zappella N, Yong-Sang J, Planesse C, Louedec L, Viranaïcken W, Bringart M, Montravers P, Denamur E, Duranteau J, Couret D, Meilhac O
Reconstituted High-density Lipoprotein Therapy Improves Survival in Mouse Models of Sepsis.
Anesthesiology 2020

Lecronier M, Tashk P, Tamzali Y, Tenaillon O, Denamur E, Barrou B, Aron-Wisnewsky J, Tourret J
Gut microbiota composition alterations are associated with the onset of diabetes in kidney transplant recipients.
PloS One 2020, 15, e0227373.

2019


de Tymowski C, Heming N, Correia MDT, Abbad L, Chavarot N, Le Stang MB, Flament H, Bex J, Boedec E, Bounaix C, Soler-Torronteras R, Denamur E, Galicier L, Oksenhendler E, Fehling HJ, Pinheiro da Silva F, Benhamou M, Monteiro RC, Ben Mkaddem S
CD89 Is a Potent Innate Receptor for Bacteria and Mediates Host Protection from Sepsis.
Cell Reports 2019, 27, 762-775.e5.

Amarsy R, Guéret D, Benmansour H, Flicoteaux R, Berçot B, Meunier F, Mougari F, Jacquier H, Pean de Ponfilly G, Clermont O, Denamur E, Teixeira A, Cambau E
Determination of Escherichia coli phylogroups in elderly patients with urinary tract infection or asymptomatic bacteriuria.
Clinical Microbiology and Infection: The Official Publication of the European Society of Clinical Microbiology and Infectious Diseases 2019, 25, 839-844.

d'Humières C, Touchon M, Dion S, Cury J, Ghozlane A, Garcia-Garcera M, Bouchier C, Ma L, Denamur E, P C Rocha E
A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach.
Scientific Reports 2019, 9, 11331.

Logre E, Denamur E, Mammeri H
Contribution to Carbapenem Resistance and Fitness Cost of DcuS/DcuR, RcsC/RcsB, and YehU/YehT Two-Component Systems in CTX-M-15-Producing Escherichia coli.
Microbial Drug Resistance (Larchmont, N.Y.) 2019

Bourrel AS, Poirel L, Royer G, Darty M, Vuillemin X, Kieffer N, Clermont O, Denamur E, Nordmann P, Decousser JW, IRG
Colistin resistance in Parisian inpatient faecal Escherichia coli as the result of two distinct evolutionary pathways.
The Journal of Antimicrobial Chemotherapy 2019, 74, 1521-1530.

Branger C, Ledda A, Billard-Pomares T, Doublet B, Barbe V, Roche D, Médigue C, Arlet G, Denamur E
Specialization of small non-conjugative plasmids in Escherichia coli according to their family types.
Microbial Genomics 2019

Clermont O, Dixit OVA, Vangchhia B, Condamine B, Dion S, Bridier-Nahmias A, Denamur E, Gordon D
Characterization and rapid identification of phylogroup G in Escherichia coli, a lineage with high virulence and antibiotic resistance potential.
Environmental Microbiology 2019, 21, 3107-3117.

Billard-Pomares T, Clermont O, Castellanos M, Magdoud F, Royer G, Condamine B, Fouteau S, Barbe V, Roche D, Cruveiller S, Médigue C, Pognard D, Glodt J, Dion S, Rigal O, Picard B, Denamur E, Branger C
The Arginine Deiminase Operon Is Responsible for a Fitness Trade-Off in Extended-Spectrum-β-Lactamase-Producing Strains of Escherichia coli.
Antimicrobial Agents and Chemotherapy 2019, 63,

Kieffer N, Royer G, Decousser JW, Bourrel AS, Palmieri M, Ortiz De La Rosa JM, Jacquier H, Denamur E, Nordmann P, Poirel L
mcr-9, an Inducible Gene Encoding an Acquired Phosphoethanolamine Transferase in Escherichia coli, and Its Origin.
Antimicrobial Agents and Chemotherapy 2019, 63,

Mahérault AC, Kemble H, Magnan M, Gachet B, Roche D, Le Nagard H, Tenaillon O, Denamur E, Branger C, Landraud L
Advantage of the F2:A1:B- IncF Pandemic Plasmid over IncC Plasmids in In Vitro Acquisition and Evolution of blaCTX-M Gene-Bearing Plasmids in Escherichia coli.
Antimicrobial Agents and Chemotherapy 2019, 63,

Burdet C, Grall N, Linard M, Bridier-Nahmias A, Benhayoun M, Bourabha K, Magnan M, Clermont O, d'Humières C, Tenaillon O, Denamur E, Massias L, Tubiana S, Alavoine L, Andremont A, Mentré F, Duval X, CG
Ceftriaxone and Cefotaxime Have Similar Effects on the Intestinal Microbiota in Human Volunteers Treated by Standard-Dose Regimens.
Antimicrobial Agents and Chemotherapy 2019, 63,

Nowrouzian FL, Clermont O, Edin M, Östblom A, Denamur E, Wold AE, Adlerberth I
Escherichia coli B2 Phylogenetic Subgroups in the Infant Gut Microbiota: Predominance of Uropathogenic Lineages in Swedish Infants and Enteropathogenic Lineages in Pakistani Infants.
Applied and Environmental Microbiology 2019, 85,

Tanaka S, Diallo D, Delbosc S, Genève C, Zappella N, Yong-Sang J, Patche J, Harrois A, Hamada S, Denamur E, Montravers P, Duranteau J, Meilhac O
High-density lipoprotein (HDL) particle size and concentration changes in septic shock patients.
Annals of Intensive Care 2019, 9, 68.

La Combe B, Clermont O, Messika J, Eveillard M, Kouatchet A, Lasocki S, Corvec S, Lakhal K, Billard-Pomares T, Fernandes R, Armand-Lefevre L, Bourdon S, Reignier J, Fihman V, de Prost N, Bador J, Goret J, Wallet F, Denamur E, Ricard JD, Cg, CG
Pneumonia-Specific Escherichia coli with Distinct Phylogenetic and Virulence Profiles, France, 2012-2014.
Emerging Infectious Diseases 2019, 25, 710-718.

2018


La Combe B, Bleibtreu A, Messika J, Fernandes R, Clermont O, Branger C, Billard-Pomares T, Barnaud G, Magdoud F, Eveillard M, Kouatchet A, Lasocki S, Asfar P, Corvec S, Lakhal K, Armand-Lefevre L, Wolff M, Timsit JF, Bourdon S, Reignier J, Martin S, Fihman V, de Prost N, Bador J, Charles PE, Goret J, Boyer A, Wallet F, Jaillette E, Nseir S, Landraud L, Ruimy R, Danin PE, Dellamonica J, Cremniter J, Frat JP, Jauréguy F, Clec'h C, Decré D, Maury E, Dreyfuss D, Denamur E, Ricard JD
Decreased susceptibility to chlorhexidine affects a quarter of Escherichia coli isolates responsible for pneumonia in ICU patients.
Intensive Care Medicine 2018, 44, 531-533.

Phillips-Houlbracq M, Ricard JD, Foucrier A, Yoder-Himes D, Gaudry S, Bex J, Messika J, Margetis D, Chatel J, Dobrindt U, Denamur E, Roux D
Pathophysiology of Escherichia coli pneumonia: Respective contribution of pathogenicity islands to virulence.
International journal of medical microbiology: IJMM 2018, 308, 290-296.

Berger M, Berger P, Denamur E, Mellmann A, Dobrindt U
Core elements of the vegetative replication control of the Inc1 plasmid pO104_90 of Escherichia coli O104:H4 also regulate its transfer frequency.
International journal of medical microbiology: IJMM 2018, 308, 962-968.

Beghain J, Bridier-Nahmias A, Le Nagard H, Denamur E, Clermont O
ClermonTyping: an easy-to-use and accurate in silico method for Escherichia genus strain phylotyping.
Microbial Genomics 2018

Branger C, Ledda A, Billard-Pomares T, Doublet B, Fouteau S, Barbe V, Roche D, Cruveiller S, Médigue C, Castellanos M, Decré D, Drieux-Rouze L, Clermont O, Glodt J, Tenaillon O, Cloeckaert A, Arlet G, Denamur E
Extended-spectrum β-lactamase-encoding genes are spreading on a wide range of Escherichia coli plasmids existing prior to the use of third-generation cephalosporins.
Microbial Genomics 2018

Royer G, Decousser JW, Branger C, Dubois M, Médigue C, Denamur E, Vallenet D
PlaScope: a targeted approach to assess the plasmidome from genome assemblies at the species level.
Microbial Genomics 2018

Desroches M, Clermont O, Lafeuillade B, Rodriguez C, Darty M, Royer G, Bouvet O, Ounnoughene N, Noizat-Pirenne F, Denamur E, Decousser JW
Genotypic and phenotypic characteristics of Escherichia coli involved in transfusion-transmitted bacterial infections: implications for preventive strategies.
Transfusion 2018, 58, 1940-1950.

Ghalayini M, Launay A, Bridier-Nahmias A, Clermont O, Denamur E, Lescat M, Tenaillon O
Evolution of a Dominant Natural Isolate of Escherichia coli in the Human Gut over the Course of a Year Suggests a Neutral Evolution with Reduced Effective Population Size.
Applied and Environmental Microbiology 2018, 84,

Desroches M, Royer G, Roche D, Mercier-Darty M, Vallenet D, Médigue C, Bastard K, Rodriguez C, Clermont O, Denamur E, Decousser JW
The Odyssey of the Ancestral Escherich Strain through Culture Collections: an Example of Allopatric Diversification.
mSphere 2018

2017


Micaëlo M, Goubard A, La Ruche G, Denamur E, Tenaillon O, Cambau E, Jacquier H, Bercot B
Molecular epidemiology of penicillinase-producing Neisseria gonorrhoeae isolates in France.
Clinical Microbiology and Infection: The Official Publication of the European Society of Clinical Microbiology and Infectious Diseases 2017, 23, 968-973.

Morel F, Decousser JW, Kumanski S, Cambau E, Denamur E, Berçot B
Association of the 16S rRNA methylase gene rmtB with a novel insertion sequence element belonging to the ISL3 family.
International Journal of Antimicrobial Agents 2017, 49, 117-118.

Tashk P, Lecronier M, Clermont O, Renvoisé A, Aubry A, Barrou B, Hertig A, Lescat M, Tenaillon O, Denamur E, Tourret J
[Molecular epidemiology and kinetics of early Escherichia coli urinary tract infections in kidney transplant recipients].
Nephrologie & Therapeutique 2017, 13, 236-244.

Clermont O, Couffignal C, Blanco J, Mentré F, Picard B, Denamur E, CaCg
Two levels of specialization in bacteraemic Escherichia coli strains revealed by their comparison with commensal strains.
Epidemiology and Infection 2017, 145, 872-882.

Mani Y, Mansour W, Mammeri H, Denamur E, Saras E, Boujâafar N, Bouallègue O, Madec JY, Haenni M
KPC-3-producing ST167 Escherichia coli from mussels bought at a retail market in Tunisia.
The Journal of Antimicrobial Chemotherapy 2017, 72, 2403-2404.

Tourret J, Willing BP, Dion S, MacPherson J, Denamur E, Finlay BB
Immunosuppressive Treatment Alters Secretion of Ileal Antimicrobial Peptides and Gut Microbiota, and Favors Subsequent Colonization by Uropathogenic Escherichia coli.
Transplantation 2017, 101, 74-82.

Messika J, Clermont O, Landraud L, Schmidt M, Aubry A, Sougakoff W, Fernandes R, Combes A, Denamur E, Ricard JD
Extra-corporeal membrane oxygenation-associated infections: implication of extra-intestinal pathogenic Escherichia coli clones.
Journal of Medical Microbiology 2017, 66, 1189-1195.

Bouvet O, Bourdelier E, Glodt J, Clermont O, Denamur E
Diversity of the auxotrophic requirements in natural isolates of Escherichia coli.
Microbiology (Reading, England) 2017, 163, 891-899.

Bouvet O, Bourdelier E, Glodt J, Clermont O, Denamur E
Erratum: Diversity of the auxotrophic requirements in natural isolates of Escherichia coli.
Microbiology (Reading, England) 2017, 163, 1260-1261.

Lescat M, Launay A, Ghalayini M, Magnan M, Glodt J, Pintard C, Dion S, Denamur E, Tenaillon O
Using long-term experimental evolution to uncover the patterns and determinants of molecular evolution of an Escherichia coli natural isolate in the streptomycin-treated mouse gut.
Molecular Ecology 2017, 26, 1802-1817.

Dupont H, Choinier P, Roche D, Adiba S, Sookdeb M, Branger C, Denamur E, Mammeri H
Structural Alteration of OmpR as a Source of Ertapenem Resistance in a CTX-M-15-Producing Escherichia coli O25b:H4 Sequence Type 131 Clinical Isolate.
Antimicrobial Agents and Chemotherapy 2017, 61,

Massot M, Couffignal C, Clermont O, D'Humières C, Chatel J, Plault N, Andremont A, Caron A, Mentré F, Denamur E
Day-to-Day Dynamics of Commensal Escherichia coli in Zimbabwean Cows Evidence Temporal Fluctuations within a Host-Specific Population Structure.
Applied and Environmental Microbiology 2017, 83,

Gordon DM, Geyik S, Clermont O, O'Brien CL, Huang S, Abayasekara C, Rajesh A, Kennedy K, Collignon P, Pavli P, Rodriguez C, Johnston BD, Johnson JR, Decousser JW, Denamur E
Fine-Scale Structure Analysis Shows Epidemic Patterns of Clonal Complex 95, a Cosmopolitan Escherichia coli Lineage Responsible for Extraintestinal Infection.
mSphere 2017

Petit F, Clermont O, Delannoy S, Servais P, Gourmelon M, Fach P, Oberlé K, Fournier M, Denamur E, Berthe T
Change in the Structure of Escherichia coli Population and the Pattern of Virulence Genes along a Rural Aquatic Continuum.
Frontiers in Microbiology 2017, 8, 609.

Galardini M, Koumoutsi A, Herrera-Dominguez L, Cordero Varela JA, Telzerow A, Wagih O, Wartel M, Clermont O, Denamur E, Typas A, Beltrao P
Phenotype inference in an Escherichia coli strain panel.
eLife 2017

2016


Njamkepo E, Fawal N, Tran-Dien A, Hawkey J, Strockbine N, Jenkins C, Talukder KA, Bercion R, Kuleshov K, Kolínská R, Russell JE, Kaftyreva L, Accou-Demartin M, Karas A, Vandenberg O, Mather AE, Mason CJ, Page AJ, Ramamurthy T, Bizet C, Gamian A, Carle I, Sow AG, Bouchier C, Wester AL, Lejay-Collin M, Fonkoua MC, Hello SL, Blaser MJ, Jernberg C, Ruckly C, Mérens A, Page AL, Aslett M, Roggentin P, Fruth A, Denamur E, Venkatesan M, Bercovier H, Bodhidatta L, Chiou CS, Clermont D, Colonna B, Egorova S, Pazhani GP, Ezernitchi AV, Guigon G, Harris SR, Izumiya H, Korzeniowska-Kowal A, Lutyńska A, Gouali M, Grimont F, Langendorf C, Marejková M, Peterson LAM, Perez-Perez G, Ngandjio A, Podkolzin A, Souche E, Makarova M, Shipulin GA, Ye C, Žemličková H, Herpay M, Grimont PAD, Parkhill J, Sansonetti P, Holt KE, Brisse S, Thomson NR, Weill FX
Global phylogeography and evolutionary history of Shigella dysenteriae type 1.
Nature Microbiology 2016, 1, 16027.

Dufour N, Clermont O, La Combe B, Messika J, Dion S, Khanna V, Denamur E, Ricard J, Debarbieux L, ColoColi group
Bacteriophage LM33_P1, a fast-acting weapon against the pandemic ST131-O25b:H4 Escherichia coli clonal complex..
Journal of Antimicrobial Chemotherapy 2016, 71, 3072.

Skurnik D, Clermont O, Guillard T, Launay A, Danilchanka O, Pons S, Diancourt L, Lebreton F, Kadlec K, Roux D, Jiang D, Dion S, Ashard H, Denamur M, Cywes-Bentley C, Schwarz S, Tenaillon O, Andremont A, Picard B, Mekalanos J, Brisse S, Denamur E
Emergence of Antimicrobial-Resistant Escherichia coli of Animal Origin Spreading in Humans.
Molecular Biology and Evolution 2016, 33, 898.

Feugeas JP, Tourret J, Launay A, Bouvet O, Hoede C, Denamur E, Tenaillon O
Links between Transcription, Environmental Adaptation and Gene Variability in Escherichia coli: Correlations between Gene Expression and Gene Variability Reflect Growth Efficiencies.
Molecular Biology and Evolution 2016

Massot M, Daubié AS, Clermont O, Jauréguy F, Couffignal C, Dahbi G, Mora A, Blanco J, Branger C, Mentré F, Eddi A, Picard B, Denamur E, The Coliville Group n
Phylogenetic, virulence and antibiotic resistance characteristics of commensal strain populations of Escherichia coli from community subjects in the Paris area in 2010 and evolution over 30 years.
Microbiology (Reading, England) 2016, 162, 642–650.

Massot M, Daubié AS, Clermont O, Jauréguy F, Couffignal C, Dahbi G, Mora A, Blanco J, Branger C, Mentré F, Eddi A, Picard B, Denamur E, The Coliville Group n
Phylogenetic, virulence and antibiotic resistance characteristics of commensal strain populations of Escherichia coli from community subjects in the Paris area in 2010 and evolution over 30 years.
Microbiology (Reading, England) 2016, 162, 642-650.

Sabarly V, Aubron C, Glodt J, Balliau T, Langella O, Chevret D, Rigal O, Bourgais A, Picard B, de Vienne D, Denamur E, Bouvet O, Dillmann C
Interactions between genotype and environment drive the metabolic phenotype within Escherichia coli isolates.
Environmental Microbiology 2016, 18, 100-117.

Mourand G, Touzain F, Jouy E, Fleury MA, Denamur E, Kempf I
Rare spontaneous loss of multi-resistance gene carrying IncI/ST12 plasmid in Escherichia coli in pig microbiota.
Antimicrobial Agents and Chemotherapy 2016

de Lastours V, Chopin D, Jacquier H, d'Humières C, Burdet C, Chau F, Denamur E, Fantin B
Prospective Cohort Study of the Relative Abundance of Extended-Spectrum-Beta-Lactamase-Producing Escherichia coli in the Gut of Patients Admitted to Hospitals.
Antimicrobial Agents and Chemotherapy 2016, 60, 6941-6944.

Mercat M, Clermont O, Massot M, Ruppe E, de Garine-Wichatitsky M, Miguel E, Valls Fox H, Cornelis D, Andremont A, Denamur E, Caron A
Escherichia coli Population Structure and Antibiotic Resistance at a Buffalo/Cattle Interface in Southern Africa.
Applied and Environmental Microbiology 2016, 82, 1459-1467.

Tourret J, Denamur E
Population Phylogenomics of Extraintestinal Pathogenic Escherichia coli.
Microbiology Spectrum 2016

Tourret J, Willing BP, Croxen MA, Dufour N, Dion S, Wachtel S, Denamur E, Finlay BB
Small Intestine Early Innate Immunity Response during Intestinal Colonization by Escherichia coli Depends on Its Extra-Intestinal Virulence Status.
PloS One 2016, 11, e0153034.

Houamel D, Ducrot N, Lefebvre T, Daher R, Moulouel B, Sari MA, Letteron P, Lyoumi S, Millot S, Tourret J, Bouvet O, Vaulont S, Vandewalle A, Denamur E, Puy H, Beaumont C, Gouya L, Karim Z
Hepcidin as a Major Component of Renal Antibacterial Defenses against Uropathogenic Escherichia coli.
Journal of the American Society of Nephrology: JASN 2016, 27, 835-846.

2015


Smati M, Clermont O, Bleibtreu A, Fourreau F, David A, Daubié AS, Hignard C, Loison O, Picard B, Denamur E
Quantitative analysis of commensal Escherichia coli populations reveals host-specific enterotypes at the intra-species level.
MicrobiologyOpen 2015, 4, 604-615.

Decousser JW, Poirel L, Desroches M, Jayol A, Denamur E, Nordmann P
Failure to detect carbapenem-resistant Escherichia coli producing OXA-48-like using the Xpert Carba-R assay®.
Clinical Microbiology and Infection: The Official Publication of the European Society of Clinical Microbiology and Infectious Diseases 2015, 21, e9-10.

Rodríguez-Beltrán J, Tourret J, Tenaillon O, López E, Bourdelier E, Costas C, Matic I, Denamur E, Blázquez J
High Recombinant Frequency in Extraintestinal Pathogenic Escherichia coli Strains.
Molecular Biology and Evolution 2015, 32, 1708.

Margetis D, Roux D, Gaudry S, Messika J, Bouvet O, Branger C, Ponnuswamy P, Oufella HA, Dreyfuss D, Denamur E, Ricard JD
Effects of Proanthocyanidins on Adhesion, Growth, and Virulence of Highly Virulent Extraintestinal Pathogenic Escherichia coli Argue for Its Use to Treat Oropharyngeal Colonization and Prevent Ventilator-Associated Pneumonia.
Critical Care Medicine 2015, 43, e170-e178.

Clermont O, Gordon D, Denamur E
A guide to the various phylogenetic classification schemes for Escherichia coli and the correspondence among schemes.
Microbiology (Reading, England) 2015

Grall N, Barraud O, Wieder I, Hua A, Perrier M, Babosan A, Gaschet M, Clermont O, Denamur E, Catzeflis F, Decré D, Ploy MC, Andremont A
Lack of dissemination of acquired resistance to β-lactam in small wild mammals around an isolated village in the Amazonian forest.
Environmental Microbiology Reports 2015

2014


Ezraty B, Henry C, Hérisse M, Denamur E, Barras F
Commercial Lysogeny Broth culture media and oxidative stress: A cautious tale.
Free Radical Biology & Medicine 2014, 74, 245-251.

Dahbi G, Mora A, Mamani R, López C, Alonso MP, Marzoa J, Blanco M, Herrera A, Viso S, García-Garrote F, Tchesnokova V, Billig M, de la Cruz F, de Toro M, González-López JJ, Prats G, Chaves F, Martínez-Martínez L, López-Cerezo L, Denamur E, Blanco J
Molecular epidemiology and virulence of Escherichia coli O16:H5-ST131: comparison with H30 and H30-Rx subclones of O25b:H4-ST131.
International journal of medical microbiology: IJMM 2014, 304, 1247-1257.

Clermont O, Christenson JK, Daubié AS, Gordon DM, Denamur E
Development of an allele-specific PCR for Escherichia coli B2 sub-typing, a rapid and easy to perform substitute of multilocus sequence typing.
Journal of Microbiological Methods 2014, 101, 24-27.

Roubaud Baudron C, Panhard X, Clermont O, Mentré F, Fantin B, Denamur E, Lefort A, CG
Escherichia coli bacteraemia in adults: age-related differences in clinical and bacteriological characteristics, and outcome.
Epidemiology and Infection 2014, 142, 2672-2683.

de Lastours V, Bleibtreu A, Chau F, Burdet C, Duval X, Denamur E, Fantin B
Quinolone-resistant Escherichia coli from the faecal microbiota of healthy volunteers after ciprofloxacin exposure are highly adapted to a commensal lifestyle.
The Journal of Antimicrobial Chemotherapy 2014, 69, 761-768.

Burdet C, Clermont O, Bonacorsi S, Laouénan C, Bingen E, Aujard Y, Mentré F, Lefort A, Denamur E, CG
Escherichia coli bacteremia in children: age and portal of entry are the main predictors of severity.
The Pediatric Infectious Disease Journal 2014, 33, 872–879.

Burdet C, Clermont O, Bonacorsi S, Laouénan C, Bingen E, Aujard Y, Mentré F, Lefort A, Denamur E, CG
Escherichia coli bacteremia in children: age and portal of entry are the main predictors of severity.
The Pediatric Infectious Disease Journal 2014, 33, 872-879.

Surgers L, Bleibtreu A, Burdet C, Clermont O, Laouénan C, Lefort A, Mentré F, Carbonne B, Bingen E, Meynard JL, Denamur E, CG
Escherichia coli bacteraemia in pregnant women is life-threatening for foetuses.
Clinical Microbiology and Infection: The Official Publication of the European Society of Clinical Microbiology and Infectious Diseases 2014, 20, O1035–1041.

Surgers L, Bleibtreu A, Burdet C, Clermont O, Laouénan C, Lefort A, Mentré F, Carbonne B, Bingen E, Meynard JL, Denamur E, CG
Escherichia coli bacteraemia in pregnant women is life-threatening for foetuses.
Clinical Microbiology and Infection: The Official Publication of the European Society of Clinical Microbiology and Infectious Diseases 2014, 20, O1035-1041.

Billard-Pomares T, Fouteau S, Jacquet ME, Roche D, Barbe V, Castellanos M, Bouet JY, Cruveiller S, Médigue C, Blanco J, Clermont O, Denamur E, Branger C
Characterization of a P1-like bacteriophage encoding an SHV-2 extended-spectrum β-lactamase from an Escherichia coli strain.
Antimicrobial Agents and Chemotherapy 2014

Bleibtreu A, Clermont O, Darlu P, Glodt J, Branger C, Picard B, Denamur E
The rpoS gene is predominantly inactivated during laboratory storage and undergoes source-sink evolution in Escherichia coli species.
Journal of Bacteriology 2014, 196, 4276-4284.

Johnson JR, Clermont O, Johnston B, Clabots C, Tchesnokova V, Sokurenko E, Junka AF, Maczynska B, Denamur E
Rapid and specific detection, molecular epidemiology, and experimental virulence of the O16 subgroup within Escherichia coli sequence type 131.
Journal of Clinical Microbiology 2014, 52, 1358-1365.

Mora A, Dahbi G, López C, Mamani R, Marzoa J, Dion S, Picard B, Blanco M, Alonso MP, Denamur E, Blanco J
Virulence patterns in a murine sepsis model of ST131 Escherichia coli clinical isolates belonging to serotypes O25b:H4 and O16:H5 are associated to specific virotypes.
PloS One 2014, 9, e87025.

Payros D, Secher T, Boury M, Brehin C, Ménard S, Salvador-Cartier C, Cuevas-Ramos G, Watrin C, Marcq I, Nougayrède JP, Dubois D, Bedu A, Garnier F, Clermont O, Denamur E, Plaisancié P, Theodorou V, Fioramonti J, Olier M, Oswald E
Maternally acquired genotoxic Escherichia coli alters offspring's intestinal homeostasis.
Gut Microbes 2014, 5, 313-325.

2013


Clermont O, Glodt J, Burdet C, Pognard D, Lefort A, Branger C, Denamur E, CGM
Complexity of Escherichia coli bacteremia pathophysiology evidenced by comparison of isolates from blood and portal of entry within single patients.
International journal of medical microbiology: IJMM 2013, 303, 529–532.

Clermont O, Glodt J, Burdet C, Pognard D, Lefort A, Branger C, Denamur E, CGM
Complexity of Escherichia coli bacteremia pathophysiology evidenced by comparison of isolates from blood and portal of entry within single patients.
International journal of medical microbiology: IJMM 2013, 303, 529-532.

Clermont O, Christenson JK, Denamur E, Gordon DM
The Clermont Escherichia coli phylo-typing method revisited: improvement of specificity and detection of new phylo-groups.
Environmental Microbiology Reports 2013, 5, 58-65.

Landraud L, Jauréguy F, Frapy E, Guigon G, Gouriou S, Carbonnelle E, Clermont O, Denamur E, Picard B, Lemichez E, Brisse S, Nassif X
Severity of Escherichia coli bacteraemia is independent of the intrinsic virulence of the strains assessed in a mouse model.
Clinical Microbiology and Infection: The Official Publication of the European Society of Clinical Microbiology and Infectious Diseases 2013, 19, 85-90.

Lescat M, Clermont O, Woerther PL, Glodt J, Dion S, Skurnik D, Djossou F, Dupont C, Perroz G, Picard B, Catzeflis F, Andremont A, Denamur E
Commensal Escherichia coli strains in Guiana reveal a high genetic diversity with host-dependant population structure.
Environmental Microbiology Reports 2013, 5, 49-57.

Ruppé E, Lixandru B, Cojocaru R, Büke C, Paramythiotou E, Angebault C, Visseaux C, Djuikoue I, Erdem E, Burduniuc O, El Mniai A, Marcel C, Perrier M, Kesteman T, Clermont O, Denamur E, Armand-Lefèvre L, Andremont A
Relative fecal abundance of extended-spectrum-β-lactamase-producing Escherichia coli strains and their occurrence in urinary tract infections in women.
Antimicrobial Agents and Chemotherapy 2013, 57, 4512-4517.

Berthe T, Ratajczak M, Clermont O, Denamur E, Petit F
Evidence for coexistence of distinct Escherichia coli populations in various aquatic environments and their survival in estuary water.
Applied and Environmental Microbiology 2013, 79, 4684-4693.

Smati M, Clermont O, Le Gal F, Schichmanoff O, Jauréguy F, Eddi A, Denamur E, Picard B, CG
Real-time PCR for quantitative analysis of human commensal Escherichia coli populations reveals a high frequency of subdominant phylogroups.
Applied and Environmental Microbiology 2013, 79, 5005-5012.

Bleibtreu A, Gros PA, Laouénan C, Clermont O, Le Nagard H, Picard B, Tenaillon O, Denamur E
Fitness, stress resistance, and extraintestinal virulence in Escherichia coli.
Infection and Immunity 2013, 81, 2733–2742.

2012


Karch H, Denamur E, Dobrindt U, Finlay BB, Hengge R, Johannes L, Ron EZ, Tønjum T, Sansonetti PJ, Vicente M
The enemy within us: lessons from the 2011 European Escherichia coli O104:H4 outbreak.
EMBO molecular medicine 2012, 4, 841-848.

Messika J, Magdoud F, Clermont O, Margetis D, Gaudry S, Roux D, Branger C, Dreyfuss D, Denamur E, Ricard JD
Pathophysiology of Escherichia coli ventilator-associated pneumonia: implication of highly virulent extraintestinal pathogenic strains.
Intensive Care Medicine 2012, 38, 2007-2016.

Labie D, Denamur E
[Genetic adaptation of bacteria].
Médecine Sciences: M/S 2012, 28, 588-590.

Desmard M, Foresti R, Morin D, Dagouassat M, Dagoussat M, Berdeaux A, Denamur E, Crook SH, Mann BE, Scapens D, Montravers P, Boczkowski J, Motterlini R
Differential antibacterial activity against Pseudomonas aeruginosa by carbon monoxide-releasing molecules.
Antioxidants & Redox Signaling 2012, 16, 153-163.

Heming N, Lettéron P, Driss F, Millot S, El Benna J, Tourret J, Denamur E, Montravers P, Beaumont C, Lasocki S
Efficacy and toxicity of intravenous iron in a mouse model of critical care anemia*.
Critical Care Medicine 2012, 40, 2141-2148.

Touchon M, Charpentier S, Pognard D, Picard B, Arlet G, Rocha EPC, Denamur E, Branger C
Antibiotic resistance plasmids spread among natural isolates of Escherichia coli in spite of CRISPR elements.
Microbiology (Reading, England) 2012, 158, 2997-3004.

Johnson JR, Porter SB, Zhanel G, Kuskowski MA, Denamur E
Virulence of Escherichia coli clinical isolates in a murine sepsis model in relation to sequence type ST131 status, fluoroquinolone resistance, and virulence genotype.
Infection and Immunity 2012, 80, 1554-1562.

Aubron C, Glodt J, Matar C, Huet O, Borderie D, Dobrindt U, Duranteau J, Denamur E, Conti M, Bouvet O
Variation in endogenous oxidative stress in Escherichia coli natural isolates during growth in urine.
BMC microbiology 2012, 12, 120.

Aubron C, Huet O, Ricome S, Borderie D, Pussard E, Leblanc PE, Bouvet O, Vicaut E, Denamur E, Duranteau J
Changes in urine composition after trauma facilitate bacterial growth.
BMC infectious diseases 2012, 12, 330.

Vimont S, Boyd A, Bleibtreu A, Bens M, Goujon JM, Garry L, Clermont O, Denamur E, Arlet G, Vandewalle A
The CTX-M-15-producing Escherichia coli clone O25b: H4-ST131 has high intestine colonization and urinary tract infection abilities.
PloS One 2012, 7, e46547.

2011


Clermont O, Olier M, Hoede C, Diancourt L, Brisse S, Keroudean M, Glodt J, Picard B, Oswald E, Denamur E
Animal and human pathogenic Escherichia coli strains share common genetic backgrounds.
Infection, Genetics and Evolution: Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases 2011, 11, 654-662.

Gutierrez A, Elez M, Clermont O, Denamur E, Matic I
Escherichia coli YafP protein modulates DNA damaging property of the nitroaromatic compounds.
Nucleic Acids Research 2011, 39, 4192-4201.

Tourret J, Aloulou M, Garry L, Tenaillon O, Dion S, Ryffel B, Monteiro RC, Denamur E
The interaction between a non-pathogenic and a pathogenic strain synergistically enhances extra-intestinal virulence in Escherichia coli.
Microbiology (Reading, England) 2011, 157, 774-785.

Sabarly V, Bouvet O, Glodt J, Clermont O, Skurnik D, Diancourt L, de Vienne D, Denamur E, Dillmann C
The decoupling between genetic structure and metabolic phenotypes in Escherichia coli leads to continuous phenotypic diversity.
Journal of Evolutionary Biology 2011, 24, 1559-1571.

Clermont O, Gordon DM, Brisse S, Walk ST, Denamur E
Characterization of the cryptic Escherichia lineages: rapid identification and prevalence.
Environmental Microbiology 2011, 13, 2468-2477.

Courpon-Claudinon A, Lefort A, Panhard X, Clermont O, Dornic Q, Fantin B, Mentré F, Wolff M, Denamur E, Branger C, CG
Bacteraemia caused by third-generation cephalosporin-resistant Escherichia coli in France: prevalence, molecular epidemiology and clinical features.
Clinical Microbiology and Infection: The Official Publication of the European Society of Clinical Microbiology and Infectious Diseases 2011, 17, 557-565.

Denamur E
The 2011 Shiga toxin-producing Escherichia coli O104:H4 German outbreak: a lesson in genomic plasticity.
Clinical Microbiology and Infection: The Official Publication of the European Society of Clinical Microbiology and Infectious Diseases 2011, 17, 1124-1125.

Billard-Pomares T, Tenaillon O, Le Nagard H, Rouy Z, Cruveiller S, Médigue C, Arlet G, Denamur E, Branger C
Complete nucleotide sequence of plasmid pTN48, encoding the CTX-M-14 extended-spectrum β-lactamase from an Escherichia coli O102-ST405 strain.
Antimicrobial Agents and Chemotherapy 2011, 55, 1270-1273.

Ingle DJ, Clermont O, Skurnik D, Denamur E, Walk ST, Gordon DM
Biofilm formation by and thermal niche and virulence characteristics of Escherichia spp.
Applied and Environmental Microbiology 2011, 77, 2695-2700.

Vieira G, Sabarly V, Bourguignon PY, Durot M, Le Fèvre F, Mornico D, Vallenet D, Bouvet O, Denamur E, Schachter V, Médigue C
Core and panmetabolism in Escherichia coli.
Journal of Bacteriology 2011, 193, 1461-1472.

Lefort A, Panhard X, Clermont O, Woerther PL, Branger C, Mentré F, Fantin B, Wolff M, Denamur E, CG
Host factors and portal of entry outweigh bacterial determinants to predict the severity of Escherichia coli bacteremia.
Journal of Clinical Microbiology 2011, 49, 777-783.

Rendueles O, Travier L, Latour-Lambert P, Fontaine T, Magnus J, Denamur E, Ghigo JM
Screening of Escherichia coli species biodiversity reveals new biofilm-associated antiadhesion polysaccharides.
mBio 2011, 2, e00043-00011.

2010


Dhanji H, Doumith M, Clermont O, Denamur E, Hope R, Livermore DM, Woodford N
Real-time PCR for detection of the O25b-ST131 clone of Escherichia coli and its CTX-M-15-like extended-spectrum beta-lactamases.
International Journal of Antimicrobial Agents 2010, 36, 355-358.

Schubert S, Nörenberg D, Clermont O, Magistro G, Wieser A, Romann E, Hoffmann C, Weinert K, Denamur E
Prevalence and phylogenetic history of the TcpC virulence determinant in Escherichia coli.
International journal of medical microbiology: IJMM 2010, 300, 429-434.

Tourret J, Diard M, Garry L, Matic I, Denamur E
Effects of single and multiple pathogenicity island deletions on uropathogenic Escherichia coli strain 536 intrinsic extra-intestinal virulence.
International journal of medical microbiology: IJMM 2010, 300, 435-439.

Denamur E, Delezoide AL, Alberti C, Bourillon A, Gubler MC, Bouvier R, Pascaud O, Elion J, Grandchamp B, Michel-Calemard L, Missy P, Zaccaria I, Le Nagard H, Gerard B, Loirat C, SFdF, Barbet J, Beaufrère AM, Berchel C, Bessières B, Boudjemaa S, Buenerd A, Carles D, Clemenson A, Dechelotte P, Devisme L, Dijoud F, Espérandieu O, Fallet C, Gonzalès M, Hillion Y, Jacob B, Joubert M, Kermanach P, Lallemand A, Laquerrière A, Laurent N, Liprandi A, Loeuillet L, Loget P, Martinovic J, Ménez F, Narcy F, Roux JJ, Rouleau-Dubois C, Sinico M, Tantau J, Wann AR
Genotype-phenotype correlations in fetuses and neonates with autosomal recessive polycystic kidney disease.
Kidney International 2010, 77, 350-358.

Woerther PL, Angebault C, Lescat M, Ruppé E, Skurnik D, Mniai AE, Clermont O, Jacquier H, Costa AD, Renard M, Bettinger RM, Epelboin L, Dupont C, Guillemot D, Rousset F, Arlet G, Denamur E, Djossou F, Andremont A
Emergence and dissemination of extended-spectrum beta-lactamase-producing Escherichia coli in the community: lessons from the study of a remote and controlled population.
The Journal of Infectious Diseases 2010, 202, 515-523.

Mihaila L, Wyplosz B, Clermont O, Garry L, Hipeaux MC, Vittecoq D, Dussaix E, Denamur E, Branger C
Probable intrafamily transmission of a highly virulent CTX-M-3-producing Escherichia coli belonging to the emerging phylogenetic subgroup D2 O102-ST405 clone.
The Journal of Antimicrobial Chemotherapy 2010, 65, 1537-1539.

Mnif B, Vimont S, Boyd A, Bourit E, Picard B, Branger C, Denamur E, Arlet G
Molecular characterization of addiction systems of plasmids encoding extended-spectrum beta-lactamases in Escherichia coli.
The Journal of Antimicrobial Chemotherapy 2010, 65, 1599-1603.

Michel A, Clermont O, Denamur E, Tenaillon O
Bacteriophage PhiX174's ecological niche and the flexibility of its Escherichia coli lipopolysaccharide receptor.
Applied and Environmental Microbiology 2010, 76, 7310-7313.

Diard M, Garry L, Selva M, Mosser T, Denamur E, Matic I
Pathogenicity-associated islands in extraintestinal pathogenic Escherichia coli are fitness elements involved in intestinal colonization.
Journal of Bacteriology 2010, 192, 4885-4893.

Moissenet D, Salauze B, Clermont O, Bingen E, Arlet G, Denamur E, Mérens A, Mitanchez D, Vu-Thien H
Meningitis caused by Escherichia coli producing TEM-52 extended-spectrum beta-lactamase within an extensive outbreak in a neonatal ward: epidemiological investigation and characterization of the strain.
Journal of Clinical Microbiology 2010, 48, 2459-2463.

Ratajczak M, Laroche E, Berthe T, Clermont O, Pawlak B, Denamur E, Petit F
Influence of hydrological conditions on the Escherichia coli population structure in the water of a creek on a rural watershed.
BMC microbiology 2010, 10, 222.

Touzain F, Denamur E, Médigue C, Barbe V, El Karoui M, Petit MA
Small variable segments constitute a major type of diversity of bacterial genomes at the species level.
Genome Biology 2010, 11, R45.

Adiba S, Nizak C, van Baalen M, Denamur E, Depaulis F
From grazing resistance to pathogenesis: the coincidental evolution of virulence factors.
PloS One 2010, 5, e11882.

2009


Auber F, Jeanpierre C, Denamur E, Jaubert F, Schleiermacher G, Patte C, Cabrol S, Leverger G, Nihoul-Fékété C, Sarnacki S
Management of Wilms tumors in Drash and Frasier syndromes.
Pediatric Blood & Cancer 2009, 52, 55-59.

Skurnik D, Lacheeb S, Bernede C, le Menac'h A, Elbaz S, Mohler J, Denamur E, Andremont A, Ruimy R
Integrons and antibiotic resistance in phylogenetic group B2 Escherichia coli.
Microbial Drug Resistance (Larchmont, N.Y.) 2009, 15, 173-178.

Marcadé G, Deschamps C, Boyd A, Gautier V, Picard B, Branger C, Denamur E, Arlet G
Replicon typing of plasmids in Escherichia coli producing extended-spectrum beta-lactamases.
The Journal of Antimicrobial Chemotherapy 2009, 63, 67-71.

Clermont O, Dhanji H, Upton M, Gibreel T, Fox A, Boyd D, Mulvey MR, Nordmann P, Ruppé E, Sarthou JL, Frank T, Vimont S, Arlet G, Branger C, Woodford N, Denamur E
Rapid detection of the O25b-ST131 clone of Escherichia coli encompassing the CTX-M-15-producing strains.
The Journal of Antimicrobial Chemotherapy 2009, 64, 274-277.

Desmard M, Davidge KS, Bouvet O, Morin D, Roux D, Foresti R, Ricard JD, Denamur E, Poole RK, Montravers P, Motterlini R, Boczkowski J
A carbon monoxide-releasing molecule (CORM-3) exerts bactericidal activity against Pseudomonas aeruginosa and improves survival in an animal model of bacteraemia.
FASEB journal: official publication of the Federation of American Societies for Experimental Biology 2009, 23, 1023-1031.

Roux D, Gaudry S, Dreyfuss D, El-Benna J, de Prost N, Denamur E, Saumon G, Ricard JD
Candida albicans impairs macrophage function and facilitates Pseudomonas aeruginosa pneumonia in rat.
Critical Care Medicine 2009, 37, 1062-1067.

Deschamps C, Clermont O, Hipeaux MC, Arlet G, Denamur E, Branger C
Multiple acquisitions of CTX-M plasmids in the rare D2 genotype of Escherichia coli provide evidence for convergent evolution.
Microbiology (Reading, England) 2009, 155, 1656-1668.

Lescat M, Calteau A, Hoede C, Barbe V, Touchon M, Rocha E, Tenaillon O, Médigue C, Johnson JR, Denamur E
A module located at a chromosomal integration hot spot is responsible for the multidrug resistance of a reference strain from Escherichia coli clonal group A.
Antimicrobial Agents and Chemotherapy 2009, 53, 2283-2288.

Lescat M, Hoede C, Clermont O, Garry L, Darlu P, Tuffery P, Denamur E, Picard B
aes, the gene encoding the esterase B in Escherichia coli, is a powerful phylogenetic marker of the species.
BMC microbiology 2009, 9, 273.

Schubert S, Darlu P, Clermont O, Wieser A, Magistro G, Hoffmann C, Weinert K, Tenaillon O, Matic I, Denamur E
Role of intraspecies recombination in the spread of pathogenicity islands within the Escherichia coli species.
PLoS pathogens 2009, 5, e1000257.

2008


Clermont O, Lavollay M, Vimont S, Deschamps C, Forestier C, Branger C, Denamur E, Arlet G
The CTX-M-15-producing Escherichia coli diffusing clone belongs to a highly virulent B2 phylogenetic subgroup.
The Journal of Antimicrobial Chemotherapy 2008, 61, 1024-1028.

Clermont O, Lescat M, O'Brien CL, Gordon DM, Tenaillon O, Denamur E
Evidence for a human-specific Escherichia coli clone.
Environmental Microbiology 2008, 10, 1000-1006.

Skurnik D, Bonnet D, Bernède-Bauduin C, Michel R, Guette C, Becker JM, Balaire C, Chau F, Mohler J, Jarlier V, Boutin JP, Moreau B, Guillemot D, Denamur E, Andremont A, Ruimy R
Characteristics of human intestinal Escherichia coli with changing environments.
Environmental Microbiology 2008, 10, 2132-2137.

Gordon DM, Clermont O, Tolley H, Denamur E
Assigning Escherichia coli strains to phylogenetic groups: multi-locus sequence typing versus the PCR triplex method.
Environmental Microbiology 2008, 10, 2484-2496.

Jaureguy F, Landraud L, Passet V, Diancourt L, Frapy E, Guigon G, Carbonnelle E, Lortholary O, Clermont O, Denamur E, Picard B, Nassif X, Brisse S
Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains.
BMC genomics 2008, 9, 560.

2007


Clermont O, Johnson JR, Menard M, Denamur E
Determination of Escherichia coli O types by allele-specific polymerase chain reaction: application to the O types involved in human septicemia.
Diagnostic Microbiology and Infectious Disease 2007, 57, 129-136.

Diard M, Baeriswyl S, Clermont O, Gouriou S, Picard B, Taddei F, Denamur E, Matic I
Caenorhabditis elegans as a simple model to study phenotypic and genetic virulence determinants of extraintestinal pathogenic Escherichia coli.
Microbes and Infection / Institut Pasteur 2007, 9, 214-223.

Le Gall T, Clermont O, Gouriou S, Picard B, Nassif X, Denamur E, Tenaillon O
Extraintestinal virulence is a coincidental by-product of commensalism in B2 phylogenetic group Escherichia coli strains.
Molecular Biology and Evolution 2007, 24, 2373-2384.

Metkar S, Awasthi S, Denamur E, Kim KS, Gangloff SC, Teichberg S, Haziot A, Silver J, Goyert SM
Role of CD14 in responses to clinical isolates of Escherichia coli: effects of K1 capsule expression.
Infection and Immunity 2007, 75, 5415-5424.

Plainvert C, Bidet P, Peigne C, Barbe V, Médigue C, Denamur E, Bingen E, Bonacorsi S
A new O-antigen gene cluster has a key role in the virulence of the Escherichia coli meningitis clone O45:K1:H7.
Journal of Bacteriology 2007, 189, 8528-8536.

2006


Johnson JR, Clermont O, Menard M, Kuskowski MA, Picard B, Denamur E
Experimental mouse lethality of Escherichia coli isolates, in relation to accessory traits, phylogenetic group, and ecological source.
The Journal of Infectious Diseases 2006, 194, 1141-1150.

Skurnik D, Ruimy R, Andremont A, Amorin C, Rouquet P, Picard B, Denamur E
Effect of human vicinity on antimicrobial resistance and integrons in animal faecal Escherichia coli.
The Journal of Antimicrobial Chemotherapy 2006, 57, 1215-1219.

Cattoir V, Lesprit P, Lascols C, Denamur E, Legrand P, Soussy CJ, Cambau E
In vivo selection during ofloxacin therapy of Escherichia coli with combined topoisomerase mutations that confer high resistance to ofloxacin but susceptibility to nalidixic acid.
The Journal of Antimicrobial Chemotherapy 2006, 58, 1054-1057.

Denamur E, Matic I
Evolution of mutation rates in bacteria.
Molecular Microbiology 2006, 60, 820-827.

Escobar-Páramo P, Le Menac'h A, Le Gall T, Amorin C, Gouriou S, Picard B, Skurnik D, Denamur E
Identification of forces shaping the commensal Escherichia coli genetic structure by comparing animal and human isolates.
Environmental Microbiology 2006, 8, 1975-1984.

Hoede C, Denamur E, Tenaillon O
Selection acts on DNA secondary structures to decrease transcriptional mutagenesis.
PLoS genetics 2006, 2, e176.

2005


Labat F, Pradillon O, Garry L, Peuchmaur M, Fantin B, Denamur E
Mutator phenotype confers advantage in Escherichia coli chronic urinary tract infection pathogenesis.
FEMS immunology and medical microbiology 2005, 44, 317-321.

Le Gall T, Mavris M, Martino MC, Bernardini ML, Denamur E, Parsot C
Analysis of virulence plasmid gene expression defines three classes of effectors in the type III secretion system of Shigella flexneri.
Microbiology (Reading, England) 2005, 151, 951-962.

Le Gall T, Darlu P, Escobar-Páramo P, Picard B, Denamur E
Selection-driven transcriptome polymorphism in Escherichia coli/Shigella species.
Genome Research 2005, 15, 260-268.

Suchland RJ, Bourillon A, Denamur E, Stamm WE, Rothstein DM
Rifampin-resistant RNA polymerase mutants of Chlamydia trachomatis remain susceptible to the ansamycin rifalazil.
Antimicrobial Agents and Chemotherapy 2005, 49, 1120-1126.

Skurnik D, Le Menac'h A, Zurakowski D, Mazel D, Courvalin P, Denamur E, Andremont A, Ruimy R
Integron-associated antibiotic resistance and phylogenetic grouping of Escherichia coli isolates from healthy subjects free of recent antibiotic exposure.
Antimicrobial Agents and Chemotherapy 2005, 49, 3062-3065.

Hommais F, Pereira S, Acquaviva C, Escobar-Páramo P, Denamur E
Single-nucleotide polymorphism phylotyping of Escherichia coli.
Applied and Environmental Microbiology 2005, 71, 4784-4792.

Denamur E, Tenaillon O, Deschamps C, Skurnik D, Ronco E, Gaillard JL, Picard B, Branger C, Matic I
Intermediate mutation frequencies favor evolution of multidrug resistance in Escherichia coli.
Genetics 2005, 171, 825-827.

Branger C, Zamfir O, Geoffroy S, Laurans G, Arlet G, Thien HV, Gouriou S, Picard B, Denamur E
Genetic background of Escherichia coli and extended-spectrum beta-lactamase type.
Emerging Infectious Diseases 2005, 11, 54-61.

2004


Tenaillon O, Denamur E, Matic I
Evolutionary significance of stress-induced mutagenesis in bacteria.
Trends in Microbiology 2004, 12, 264-270.

Escobar-Páramo P, Grenet K, Le Menac'h A, Rode L, Salgado E, Amorin C, Gouriou S, Picard B, Rahimy MC, Andremont A, Denamur E, Ruimy R
Large-scale population structure of human commensal Escherichia coli isolates.
Applied and Environmental Microbiology 2004, 70, 5698-5700.

Escobar-Páramo P, Sabbagh A, Darlu P, Pradillon O, Vaury C, Denamur E, Lecointre G
Decreasing the effects of horizontal gene transfer on bacterial phylogeny: the Escherichia coli case study.
Molecular Phylogenetics and Evolution 2004, 30, 243-250.

2003


Simon-Bouy B, Satre V, Ferec C, Malinge MC, Girodon E, Denamur E, Leporrier N, Lewin P, Forestier F, Muller F, FCG
Hyperechogenic fetal bowel: a large French collaborative study of 682 cases.
American Journal of Medical Genetics. Part A 2003, 121A, 209-213.

Escobar-Páramo P, Giudicelli C, Parsot C, Denamur E
The evolutionary history of Shigella and enteroinvasive Escherichia coli revised.
Journal of Molecular Evolution 2003, 57, 140-148.

Bjedov I, Tenaillon O, Gérard B, Souza V, Denamur E, Radman M, Taddei F, Matic I
Stress-induced mutagenesis in bacteria.
Science (New York, N.Y.) 2003, 300, 1404-1409.

Kesrouani AK, Guibourdenche J, Muller F, Denamur E, Vuillard E, Garel C, Delezoide AL, Eydoux P, Tachdjian G, Lebon P, de Lagausie P, Sibony O, Bauman C, Oury JF, Luton D
Etiology and outcome of fetal echogenic bowel. Ten years of experience.
Fetal Diagnosis and Therapy 2003, 18, 240-246.

Bjedov I, Lecointre G, Tenaillon O, Vaury C, Radman M, Taddei F, Denamur E, Matic I
Polymorphism of genes encoding SOS polymerases in natural populations of Escherichia coli.
DNA repair 2003, 2, 417-426.

Loirat C, André JL, Champigneulle J, Acquaviva C, Chantereau D, Bourquard R, Elion J, Denamur E
WT1 splice site mutation in a 46,XX female with minimal-change nephrotic syndrome and Wilms' tumour.
Nephrology, Dialysis, Transplantation: Official Publication of the European Dialysis and Transplant Association - European Renal Association 2003, 18, 823-825.

Hommais F, Gouriou S, Amorin C, Bui H, Rahimy MC, Picard B, Denamur E
The FimH A27V mutation is pathoadaptive for urovirulence in Escherichia coli B2 phylogenetic group isolates.
Infection and Immunity 2003, 71, 3619-3622.

2002


Denamur E, Bonacorsi S, Giraud A, Duriez P, Hilali F, Amorin C, Bingen E, Andremont A, Picard B, Taddei F, Matic I
High frequency of mutator strains among human uropathogenic Escherichia coli isolates.
Journal of Bacteriology 2002, 184, 605-609.

Schubert S, Picard B, Gouriou S, Heesemann J, Denamur E
Yersinia high-pathogenicity island contributes to virulence in Escherichia coli causing extraintestinal infections.
Infection and Immunity 2002, 70, 5335-5337.

Rocha EPC, Pradillon O, Bui H, Sayada C, Denamur E
A new family of highly variable proteins in the Chlamydophila pneumoniae genome.
Nucleic Acids Research 2002, 30, 4351-4360.

2001


Picard B, Duriez P, Gouriou S, Matic I, Denamur E, Taddei F
Mutator natural Escherichia coli isolates have an unusual virulence phenotype.
Infection and Immunity 2001, 69, 9-14.

Deloménie C, Fouix S, Longuemaux S, Brahimi N, Bizet C, Picard B, Denamur E, Dupret JM
Identification and functional characterization of arylamine N-acetyltransferases in eubacteria: evidence for highly selective acetylation of 5-aminosalicylic acid.
Journal of Bacteriology 2001, 183, 3417-3427.

Duriez P, Clermont O, Bonacorsi S, Bingen E, Chaventré A, Elion J, Picard B, Denamur E
Commensal Escherichia coli isolates are phylogenetically distributed among geographically distinct human populations.
Microbiology (Reading, England) 2001, 147, 1671-1676.

Chen JM, Cutler C, Jacques C, Boeuf G, Denamur E, Lecointre G, Mercier B, Cramb G, Férec C
A combined analysis of the cystic fibrosis transmembrane conductance regulator: implications for structure and disease models.
Molecular Biology and Evolution 2001, 18, 1771-1788.

Swiatecka-Urban A, Mokrzycki MH, Kaskel F, Da Silva F, Denamur E
Novel WT1 mutation (C388Y) in a female child with Denys-Drash syndrome.
Pediatric Nephrology (Berlin, Germany) 2001, 16, 627-630.

2000


Denamur E, Bocquet N, Baudouin V, Da Silva F, Veitia R, Peuchmaur M, Elion J, Gubler MC, Fellous M, Niaudet P, Loirat C
WT1 splice-site mutations are rarely associated with primary steroid-resistant focal and segmental glomerulosclerosis.
Kidney International 2000, 57, 1868-1872.

Cavé H, Polak M, Drunat S, Denamur E, Czernichow P
Refinement of the 6q chromosomal region implicated in transient neonatal diabetes.
Diabetes 2000, 49, 108-113.

Aguilar-Martinez P, Schved JF, Badens C, Thuret I, Michel G, Neonato MG, Peltier JY, Girot R, Pissard S, Galacteros F, Bachir D, Rose C, Picot MC, Denamur E, Elion J
Iron overload in thalassaemias and genetic haemochromatosis.
European Journal of Haematology 2000, 64, 279-280.

Denamur E, André JL, Niaudet P, Loirat C
Absence of correlation between genotype and the severity of diffuse mesangial sclerosis in Denys-Drash syndrome.
Pediatric Nephrology (Berlin, Germany) 2000, 14, 439-440.

Tredano M, Cneude F, Denamur E, Truffert P, Capron F, Manouvrier S, Feldmann D, Couderc R, Elion J, Lacaze-Masmonteil T
[Constitutional deficiency of pulmonary surfactant protein B: clinical presentation, histologic and molecular diagnosis].
Archives De Pédiatrie: Organe Officiel De La Sociéte Française De Pédiatrie 2000, 7, 641-644.

Dunn DT, Simonds RJ, Bulterys M, Kalish LA, Moye J, de Maria A, Kind C, Rudin C, Denamur E, Krivine A, Loveday C, Newell ML
Interventions to prevent vertical transmission of HIV-1: effect on viral detection rate in early infant samples.
AIDS (London, England) 2000, 14, 1421-1428.

Bönte A, Schröder W, Denamur E, Querfeld U
Absent pubertal development in a child with chronic renal failure: the case of Frasier syndrome.
Nephrology, Dialysis, Transplantation: Official Publication of the European Dialysis and Transplant Association - European Renal Association 2000, 15, 1688-1690.

Denamur E, Lecointre G, Darlu P, Tenaillon O, Acquaviva C, Sayada C, Sunjevaric I, Rothstein R, Elion J, Taddei F, Radman M, Matic I
Evolutionary implications of the frequent horizontal transfer of mismatch repair genes.
Cell 2000, 103, 711-721.

1999


Topaloglu R, Denamur E, Akyüz C, Kale G, Bakkaloglu A
Wilms' tumour-associated late nephrotic syndrome responsive to treatment.
Nephrology, Dialysis, Transplantation: Official Publication of the European Dialysis and Transplant Association - European Renal Association 1999, 14, 954-956.

Denamur E, Bocquet N, Mougenot B, Da Silva F, Martinat L, Loirat C, Elion J, Bensman A, Ronco PM
Mother-to-child transmitted WT1 splice-site mutation is responsible for distinct glomerular diseases.
Journal of the American Society of Nephrology: JASN 1999, 10, 2219-2223.

Picard B, Garcia JS, Gouriou S, Duriez P, Brahimi N, Bingen E, Elion J, Denamur E
The link between phylogeny and virulence in Escherichia coli extraintestinal infection.
Infection and Immunity 1999, 67, 546-553.

1998


Jeanpierre C, Denamur E, Henry I, Cabanis MO, Luce S, Cécille A, Elion J, Peuchmaur M, Loirat C, Niaudet P, Gubler MC, Junien C
Identification of constitutional WT1 mutations, in patients with isolated diffuse mesangial sclerosis, and analysis of genotype/phenotype correlations by use of a computerized mutation database.
American Journal of Human Genetics 1998, 62, 824-833.

Bingen E, Picard B, Brahimi N, Mathy S, Desjardins P, Elion J, Denamur E
Phylogenetic analysis of Escherichia coli strains causing neonatal meningitis suggests horizontal gene transfer from a predominant pool of highly virulent B2 group strains.
The Journal of Infectious Diseases 1998, 177, 642-650.

Verlingue C, Vuillaumier S, Mercier B, Le Gac M, Elion J, Férec C, Denamur E
Absence of mutations in the interspecies conserved regions of the CFTR promoter region in cystic fibrosis (CF) and CF related patients.
Journal of Medical Genetics 1998, 35, 137-140.

Muller F, Dommergues M, Simon-Bouy B, Ferec C, Oury JF, Aubry MC, Bessis R, Vuillard E, Denamur E, Bienvenu T, Serre JL
Cystic fibrosis screening: a fetus with hyperechogenic bowel may be the index case.
Journal of Medical Genetics 1998, 35, 657-660.

Dixméras I, Lapouméroulie C, Tallec LP, Bens M, Elion J, Vandewalle A, Denamur E
CFTR regions containing duodenum specific DNase I hypersensitive sites drive expression in intestinal crypt cells but not in fibroblasts.
Biochemical and Biophysical Research Communications 1998, 250, 328-334.

Rolland K, Lambert-Zechovsky N, Picard B, Denamur E
Shigella and enteroinvasive Escherichia coli strains are derived from distinct ancestral strains of E. coli.
Microbiology (Reading, England) 1998, 144 ( Pt 9), 2667-2672.

Lecointre G, Rachdi L, Darlu P, Denamur E
Escherichia coli molecular phylogeny using the incongruence length difference test.
Molecular Biology and Evolution 1998, 15, 1685-1695.

1997


Gouya L, Pascaud O, Munck A, Elion J, Denamur E
Novel mutation (A141D) in exon 4 of the CFTR gene identified in an Algerian patient.
Human Mutation 1997, 10, 86-87.

Vuillaumier S, Kaltenboeck B, Lecointre G, Lehn P, Denamur E
Phylogenetic analysis of cystic fibrosis transmembrane conductance regulator gene in mammalian species argues for the development of a rabbit model for cystic fibrosis.
Molecular Biology and Evolution 1997, 14, 372-380.

Matic I, Radman M, Taddei F, Picard B, Doit C, Bingen E, Denamur E, Elion J
Highly variable mutation rates in commensal and pathogenic Escherichia coli.
Science (New York, N.Y.) 1997, 277, 1833-1834.

Bingen E, Bonacorsi S, Brahimi N, Denamur E, Elion J
Virulence patterns of Escherichia coli K1 strains associated with neonatal meningitis.
Journal of Clinical Microbiology 1997, 35, 2981-2982.

Vuillaumier S, Dixmeras I, Messaï H, Lapouméroulie C, Lallemand D, Gekas J, Chehab FF, Perret C, Elion J, Denamur E
Cross-species characterization of the promoter region of the cystic fibrosis transmembrane conductance regulator gene reveals multiple levels of regulation.
The Biochemical Journal 1997, 327 ( Pt 3), 651-662.

1996


Gérard B, Peponnet C, Brunie G, Cavé H, Denamur E, d'Auriol L, Monplaisir N, Simon F, Elion J, Grandchamp B
Fluorometric detection of HIV-1 genome through use of an internal control, inosine-substituted primers, and microtiter plate format.
Clinical Chemistry 1996, 42, 696-703.

Doit C, Denamur E, Picard B, Geslin P, Elion J, Bingen E
Mechanisms of the spread of penicillin resistance in Streptococcus pneumoniae strains causing meningitis in children in France.
The Journal of Infectious Diseases 1996, 174, 520-528.

Messaoud T, Verlingue C, Denamur E, Pascaud O, Quéré I, Fattoum S, Elion J, Férec C
Distribution of CFTR mutations in cystic fibrosis patients of Tunisian origin: identification of two novel mutations.
European journal of human genetics: EJHG 1996, 4, 20-24.

Bingen E, Denamur E, Brahimi N, Elion J
Genotyping may provide rapid identification of Escherichia coli K1 organisms that cause neonatal meningitis.
Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America 1996, 22, 152-156.

1995


Denamur E, Chehab FF
Methylation status of CpG sites in the mouse and human CFTR promoters.
DNA and cell biology 1995, 14, 811-815.

Desjardins P, Picard B, Kaltenböck B, Elion J, Denamur E
Sex in Escherichia coli does not disrupt the clonal structure of the population: evidence from random amplified polymorphic DNA and restriction-fragment-length polymorphism.
Journal of Molecular Evolution 1995, 41, 440-448.

Sayada C, Denamur E, Grandchamp B, Orfila J, Elion J
Denaturing gradient gel electrophoresis analysis for the detection of point mutations in the Chlamydia trachomatis major outer-membrane protein gene.
Journal of Medical Microbiology 1995, 43, 14-25.

Sayada C, Andersen AA, Storey C, Milon A, Eb F, Hashimoto N, Hirai K, Elion J, Denamur E
Usefulness of omp1 restriction mapping for avian Chlamydia psittaci isolate differentiation.
Research in Microbiology 1995, 146, 155-165.

Sayada C, Vretou E, Orfila J, Elion J, Denamur E
Heterogeneity within the first constant segment of the major outer membrane protein gene in Chlamydia trachomatis serovar D/Da distinguishes 2 lineages.
Comptes rendus de l'Académie des sciences. Série III, Sciences de la vie 1995, 318, 943-949.

Dunn DT, Brandt CD, Krivine A, Cassol SA, Roques P, Borkowsky W, De Rossi A, Denamur E, Ehrnst A, Loveday C
The sensitivity of HIV-1 DNA polymerase chain reaction in the neonatal period and the relative contributions of intra-uterine and intra-partum transmission.
AIDS (London, England) 1995, 9, F7-11.

1994


Denamur E, Chehab FF
Analysis of the mouse and rat CFTR promoter regions.
Human Molecular Genetics 1994, 3, 1089-1094.

Vilmer E, Quelvennec E, Plouvier E, Denamur E, Rohrlich P, Elion J, Sterkers G
HLA-mismatched cord blood transplantation: immunological studies.
Blood Cells 1994, 20, 235-241.

Dufourcq R, Vuillaumier S, Pascaud O, Guidal C, Oury JF, Elion J, Denamur E
Compound heterozygosity for delta F508 and F508C: a cautionary note on the molecular diagnosis of cystic fibrosis.
Prenatal Diagnosis 1994, 14, 1176-1177.

Picard B, Denamur E, Barakat A, Elion J, Goullet P
Genetic heterogeneity of Pseudomonas aeruginosa clinical isolates revealed by esterase electrophoretic polymorphism and restriction fragment length polymorphism of the ribosomal RNA gene region.
Journal of Medical Microbiology 1994, 40, 313-322.

Bingen EH, Denamur E, Elion J
Use of ribotyping in epidemiological surveillance of nosocomial outbreaks.
Clinical Microbiology Reviews 1994, 7, 311-327.

Pescatore P, Marteau P, Lemière E, Xerri B, Denamur E, Elion J, Matuchansky C, Rambaud JC
[Mucoviscidosis discovered after the age of 25 years. Review and follow-up of cases of the literature].
Gastroentérologie Clinique Et Biologique 1994, 18, 195-199.

Cavé H, Mariani P, Grandchamp B, Elion J, Denamur E
Reliability of PCR directly from stool samples: usefulness of an internal standard.
BioTechniques 1994, 16, 809-810.

Cavé H, Bingen E, Elion J, Denamur E
Differentiation of Escherichia coli strains using randomly amplified polymorphic DNA analysis.
Research in Microbiology 1994, 145, 141-150.

Sayada C, Andersen A, Rodriguez P, Eb F, Milon A, Elion J, Denamur E
Homogeneity of the major outer membrane protein gene of feline Chlamydia psittaci.
Research in Veterinary Science 1994, 56, 116-118.

Mariani-Kurkdjian P, Denamur E, Milon A, Picard B, Cave H, Lambert-Zechovsky N, Loirat C, Goullet P, Sansonetti PJ, Elion J
Identification of a clone of Escherichia coli O103:H2 as potential agent of hemolytic-uremic syndrome in France.
Journal of Clinical Microbiology 1994, 32, 860.

1993


Denamur E, Picard B, Decoux G, Denis JB, Elion J
The absence of correlation between allozyme and rrn RFLP analysis indicates a high gene flow rate within human clinical Pseudomonas aeruginosa isolates.
FEMS microbiology letters 1993, 110, 275-280.

Denamur E, Levine M, Simon F, Rohrlich P, Cave H, Rahimy C, de Crepy A, Boissinot C, Larchee R, Lescoeur B
Conversion of HIV-1 viral markers during the first few months of life in HIV-infected children born to seropositive mothers.
AIDS (London, England) 1993, 7, 897-899.

Bingen EH, Desjardins P, Arlet G, Bourgeois F, Mariani-Kurkdjian P, Lambert-Zechovsky NY, Denamur E, Philippon A, Elion J
Molecular epidemiology of plasmid spread among extended broad-spectrum beta-lactamase-producing Klebsiella pneumoniae isolates in a pediatric hospital.
Journal of Clinical Microbiology 1993, 31, 179-184.

Mariani-Kurkdjian P, Denamur E, Milon A, Picard B, Cave H, Lambert-Zechovsky N, Loirat C, Goullet P, Sansonetti PJ, Elion J
Identification of a clone of Escherichia coli O103:H2 as a potential agent of hemolytic-uremic syndrome in France.
Journal of Clinical Microbiology 1993, 31, 296-301.

Simon F, Rahimy C, Krivine A, Levine M, Pepin JM, Lapierre D, Denamur E, Vernoux L, De Crepy A, Blot P
Antibody avidity measurement and immune complex dissociation for serological diagnosis of vertically acquired HIV-1 infection.
Journal of Acquired Immune Deficiency Syndromes 1993, 6, 201-207.

Bingen E, Cavé H, Aujard Y, Lambert-Zechovsky N, Desjardins P, Elion J, Denamur E
Molecular analysis of multiply recurrent meningitis due to Escherichia coli K1 in an infant.
Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America 1993, 16, 82-85.

Bingen E, Boissinot C, Desjardins P, Cave H, Brahimi N, Lambert-Zechovsky N, Denamur E, Blot P, Elion J
Arbitrarily primed polymerase chain reaction provides rapid differentiation of Proteus mirabilis isolates from a pediatric hospital.
Journal of Clinical Microbiology 1993, 31, 1055-1059.

1992


Bingen E, Denamur E, Lambert-Zechovsky N, Elion J
[Contribution of molecular typing in the surveillance of nosocomial infections. Experience in pediatric hospitals].
Presse Médicale (Paris, France: 1983) 1992, 21, 1504-1506.

Bingen E, Denamur E, Lambert-Zechovsky N, Boissinot C, Brahimi N, Aujard Y, Blot P, Elion J
Mother-to-infant vertical transmission and cross-colonization of Streptococcus pyogenes confirmed by DNA restriction fragment length polymorphism analysis.
The Journal of Infectious Diseases 1992, 165, 147-150.

Bingen E, Denamur E, Lambert-Zechovsky N, Aujard Y, Brahimi N, Geslin P, Elion J
Analysis of DNA restriction fragment length polymorphism extends the evidence for breast milk transmission in Streptococcus agalactiae late-onset neonatal infection.
The Journal of Infectious Diseases 1992, 165, 569-573.

Lambert-Zechovsky N, Bingen E, Denamur E, Brahimi N, Brun P, Mathieu H, Elion J
Molecular analysis provides evidence for the endogenous origin of bacteremia and meningitis due to Enterobacter cloacae in an infant.
Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America 1992, 15, 30-32.

Bingen E, Denamur E, Lambert-Zechovsky N, Brahimi N, el Lakany M, Elion J
Rapid genotyping shows the absence of cross-contamination in Enterobacter cloacae nosocomial infections.
The Journal of Hospital Infection 1992, 21, 95-101.

Bingen EH, Mariani-Kurkdjian P, Lambert-Zechovsky NY, Desjardins P, Denamur E, Aujard Y, Vilmer E, Elion J
Ribotyping provides efficient differentiation of nosocomial Serratia marcescens isolates in a pediatric hospital.
Journal of Clinical Microbiology 1992, 30, 2088-2091.

Bingen E, Denamur E, Lambert-Zechovsky N, Braimi N, el Lakany M, Elion J
DNA restriction fragment length polymorphism differentiates recurrence from relapse in treatment failures of Streptococcus pyogenes pharyngitis.
Journal of Medical Microbiology 1992, 37, 162-164.

Bingen E, Denamur E, Picard B, Goullet P, Lambert-Zechovsky N, Foucaud P, Navarro J, Elion J
Molecular epidemiological analysis of Pseudomonas aeruginosa strains causing failure of antibiotic therapy in cystic fibrosis patients.
European Journal of Clinical Microbiology & Infectious Diseases: Official Publication of the European Society of Clinical Microbiology 1992, 11, 432-437.

Sayada C, Denamur E, Elion J
Complete sequence of the major outer membrane protein-encoding gene of Chlamydia trachomatis serovar Da.
Gene 1992, 120, 129-130.

Picard B, Denamur E, Souriau A, Orfila J, Rodolakis A, Goullet P
Enzyme electrophoretic polymorphism differentiates invasive from non-invasive Chlamydia psittaci ruminant isolates.
Research in Microbiology 1992, 143, 525-531.

Sayada C, Denamur E, Xerri B, Orfila J, Catalan F, Elion J
[Epidemiology of Chlamydia trachomatis using analysis of gene encoding of the major outer membrane protein].
Pathologie-Biologie 1992, 40, 583-589.

Vilmer E, Sterkers G, Rahimy C, Denamur E, Elion J, Broyart A, Lescoeur B, Tiercy JM, Gerota J, Blot P
HLA-mismatched cord-blood transplantation in a patient with advanced leukemia.
Transplantation 1992, 53, 1155-1157.

Bingen EH, Denamur E, Picard B, Goullet P, Lambert-Zechovsky NY, Brahimi N, Mercier JC, Beaufils F, Elion J
Molecular epidemiology unravels the complexity of neonatal Escherichia coli acquisition in twins.
Journal of Clinical Microbiology 1992, 30, 1896-1898.

1991


Denamur E, Picard B, Goullet P, Bingen E, Lambert N, Elion J
Complexity of Pseudomonas aeruginosa infection in cystic fibrosis: combined results from esterase electrophoresis and rDNA restriction fragment length polymorphism analysis.
Epidemiology and Infection 1991, 106, 531-539.

Bingen EH, Denamur E, Lambert-Zechovsky NY, Bourdois A, Mariani-Kurkdjian P, Cezard JP, Navarro J, Elion J
DNA restriction fragment length polymorphism differentiates crossed from independent infections in nosocomial Xanthomonas maltophilia bacteremia.
Journal of Clinical Microbiology 1991, 29, 1348-1350.

Bingen EH, Denamur E, Lambert-Zechovsky NY, Elion J
Evidence for the genetic unrelatedness of nosocomial vancomycin-resistant Enterococcus faecium strains in a pediatric hospital.
Journal of Clinical Microbiology 1991, 29, 1888-1892.

Denamur E, Sayada C, Souriau A, Orfila J, Rodolakis A, Elion J
Restriction pattern of the major outer-membrane protein gene provides evidence for a homogeneous invasive group among ruminant isolates of Chlamydia psittaci.
Journal of General Microbiology 1991, 137, 2525-2530.

Sayada C, Denamur E, Orfila J, Catalan F, Elion J
Rapid genotyping of the Chlamydia trachomatis major outer membrane protein by the polymerase chain reaction.
FEMS microbiology letters 1991, 67, 73-78.

Jarry C, Denamur E, Suermondt G, Tossou H, Capron JP, Orfila J
[Cholangitis caused by Aeromonas hydrophila and Aeromonas caviae].
Presse Médicale (Paris, France: 1983) 1991, 20, 1345.

Denamur E, Picard-Pasquier N, Mura C, Picard B, Orfila J, Krishnamoorthy R
Comparison of molecular epidemiological tools for Branhamella catarrhalis typing.
Research in Microbiology 1991, 142, 585-589.

1989


Suermondt G, Denamur E, Fleuret A, Laurans G, Orfila J
[In vitro activity of miocamycin compared with four other macrolides and with pristinamycin against Branhamella catarrhalis].
Pathologie-Biologie 1989, 37, 386-389.

Denamur E, Suermondt G, Debroca A, Defouilloy C, Laurans G, Muir JF, Orfila J
[Nosocomial pulmonary infections caused by Branhamella catarrhalis in intensive care units].
Agressologie: Revue Internationale De Physio-Biologie Et De Pharmacologie Appliquées Aux Effets De L'agression 1989, 30, 251-253.

Picard B, Goullet P, Denamur E, Suermondt G
Esterase electrophoresis: a molecular tool for studying the epidemiology of Branhamella catarrhalis nosocomial infection.
Epidemiology and Infection 1989, 103, 547-554.

Puy H, Canarelli B, Denamur E, Strunsky V, Orfila J
[Otitis caused by Vibrio alginolyticus].
Presse Médicale (Paris, France: 1983) 1989, 18, 985.

1988


Ducroix JP, Guerlin M, Hary L, Smail A, Denamur E, Eb F, Andrejak M, Baillet J
[Clinical and pharmacokinetic study of ceftriaxone in the treatment of 14 episodes of ascitic fluid infection].
Pathologie-Biologie 1988, 36, 1007-1010.

Suermondt G, Denamur E, Laurans G, Orfila J
[In vitro activity of 3 fluoroquinolones on Branhamella catarrhalis].
Pathologie-Biologie 1988, 36, 647-650.

Denamur E, Thomas D, Eb F, Sevenet F, Mancheron H, Fardellone P, Sebert JL
[Listeria monocytogenes septic arthritis of the knee].
Revue Du Rhumatisme Et Des Maladies Ostéo-Articulaires 1988, 55, 963-964.

1987


Denamur E, Pautard JC, Ducroix JP, Masmoudi K, Eb F, Riou JY, Orfila J
Meningococcal disease due to group A Neisseria meningitidis in contacts of Mecca pilgrims.
Lancet 1987, 2, 1211.

Denamur E, Suermondt G, Laurans G, Muir JF, Orfila J
[Increasing role of Branhamella catarrhalis in bronchopulmonary pathology in adults].
Presse Médicale (Paris, France: 1983) 1987, 16, 1202.

1985


Denamur E, Tribouilloy C, Lesbre JP
[Endocarditis in Barlow's disease. Value of two-dimensional echography].
Presse Médicale (Paris, France: 1983) 1985, 14, 430-431.

1984


Roué R, Debord T, Denamur E, Ferry M, Dormont D, Barre-Sinoussi F, Rouzioux C
Diagnosis of Toxoplasma encephalitis in absence of neurological signs by early computerised tomographic scanning in patients with AIDS.
Lancet 1984, 2, 1472.

Lallement PY, Kaloustian E, Denamur E, Veyssier P
[Postserum cephalic tetanus. A case after anatoxin therapy and homologous serotherapy].
Presse Médicale (Paris, France: 1983) 1984, 13, 562.

Denamur E, Kaloustian E, Veyssier P, Plouin PF
Polyuria polydipsia syndrome showing a renal infarction.
Clinical Nephrology 1984, 22, 107-108.

Denamur E, Tumerelle E, Lallement PY, Darchis JP, Veyssier P
[Clostridium paraputrificum fulminant septicemia and gas gangrene disclosing acute promyelocytic leukemia].
LARC médical 1984, 4, 236.

1983


Denamur E, Latrive JP, Veyssier P
[Clear cell adenocarcinoma of the left kidney. Successive thyroid, duodenopancreatic and cervical lymph node metastases].
Presse Médicale (Paris, France: 1983) 1983, 12, 3003.