Members
First name: Julie Last name: Marin Function: Associate Professor / Maître de conférence Position: Associate Professor / Maître de conférence Email: julie.marin inserm.fr |
Research interest
My research interests focus on the study of the evolution of antibiotic resistance and virulence in bacterial populations, with a particular interest in Escherichia coli commensal populations.
Education
Degree
2012 : PhD in Systematic and Evolution, Muséum National d’Histoire Naturelle, Paris
2008 : Master degree in Biodiversity Ecology and Evolution, Paul Sabatier University, Toulouse
2008 : Master degree in Biodiversity Ecology and Evolution, Paul Sabatier University, Toulouse
Academic positions
2020-present: Associate Professor in Bacterial Genomics and Bioinformatics, Sorbonne Paris Nord University
Research training (post doctoral)
2019-2020: Post Doctoral fellow, Genomics and Modeling, Collège de France and Paris Diderot Medical School, Paris
2017-2019: Post Doctoral fellow, Population Genetics and Modeling, Collège de France, Paris
2012-2017: Post Doctoral fellow, Ecology and Evolution, Penn State University, State College and Temple University, Philadelphia (USA)
2017-2019: Post Doctoral fellow, Population Genetics and Modeling, Collège de France, Paris
2012-2017: Post Doctoral fellow, Ecology and Evolution, Penn State University, State College and Temple University, Philadelphia (USA)
List of the main publications
Marin J, Clermont O, Royer G, Mercier-Darty M, Decousser JW, Tenaillon O, Denamur E, Blanquart F
The Population Genomics of Increased Virulence and Antibiotic Resistance in Human Commensal Escherichia coli over 30 Years in France.
Applied and Environmental Microbiology 2022, 88, e0066422.
Manceau M, Marin J, Morlon H, Lambert A
Model-Based Inference of Punctuated Molecular Evolution..
Molecular biology and evolution 2020, 37, 3308-3323.
Marin J, Achaz G, Crombach A, Lambert A
The genomic view of diversification..
Journal of evolutionary biology 2020, 33, 1387-1404.
Marin J, Battistuzzi FU, Brown AC, Hedges SB
The Timetree of Prokaryotes: New Insights into Their Evolution and Speciation..
Molecular biology and evolution 2017, 34, 437-446.
The Population Genomics of Increased Virulence and Antibiotic Resistance in Human Commensal Escherichia coli over 30 Years in France.
Applied and Environmental Microbiology 2022, 88, e0066422.
Manceau M, Marin J, Morlon H, Lambert A
Model-Based Inference of Punctuated Molecular Evolution..
Molecular biology and evolution 2020, 37, 3308-3323.
Marin J, Achaz G, Crombach A, Lambert A
The genomic view of diversification..
Journal of evolutionary biology 2020, 33, 1387-1404.
Marin J, Battistuzzi FU, Brown AC, Hedges SB
The Timetree of Prokaryotes: New Insights into Their Evolution and Speciation..
Molecular biology and evolution 2017, 34, 437-446.
Exhaustive list of publications
2023
Quagliaro P, Dziri S, Magdoud El Alaoui F, Saint Louis P, de Pontual L, Marin J, Carbonnelle E, Billard-Pomares T
Performances of bioinformatics tools for the analysis of sequencing data of Mycobacterium tuberculosis complex strains.
Tuberculosis (Edinburgh, Scotland) 2023, 139, 102324.
Senelle G, Sahal MR, La K, Billard-Pomares T, Marin J, Mougari F, Bridier-Nahmias A, Carbonnelle E, Cambau E, Refrégier G, Guyeux C, Sola C
Towards the reconstruction of a global TB history using a new pipeline "TB-Annotator".
Tuberculosis (Edinburgh, Scotland) 2023, 143S, 102376.
Kolakowska A, Brichler S, Delagrèverie H, Marin J, Alloui AC, Cailhol J
Cross sectional survey of Varicella-Zoster virus and measles seropositivity in people living with HIV in a Parisian suburb and a review of current immunization guidelines.
Vaccine 2023, 41, 3266-3274.
Royer G, Clermont O, Marin J, Condamine B, Dion S, Blanquart F, Galardini M, Denamur E
Epistatic interactions between the high pathogenicity island and other iron uptake systems shape Escherichia coli extra-intestinal virulence.
Nature Communications 2023, 14, 3667.
Pineros N, Tenaillon K, Marin J, Berry V, Jaureguy F, Ghelfenstein-Ferreira T, Carbonnelle E, Lescat M
Using gamification to improve engagement and learning outcomes in medical microbiology: the case study of 'BacteriaGame'.
FEMS microbiology letters 2023, 370, fnad034.
Burgaya J, Marin J, Royer G, Condamine B, Gachet B, Clermont O, Jaureguy F, Burdet C, Lefort A, de Lastours V, Denamur E, Galardini M, Blanquart F, Colibafi/Septicoli & Coliville groups
The bacterial genetic determinants of Escherichia coli capacity to cause bloodstream infections in humans.
PLoS genetics 2023, 19, e1010842.
2022
Cox N, Young BE, Bowles P, Fernandez M, Marin J, Rapacciuolo G, Böhm M, Brooks TM, Hedges SB, Hilton-Taylor C, Hoffmann M, Jenkins RKB, Tognelli MF, Alexander GJ, Allison A, Ananjeva NB, Auliya M, Avila LJ, Chapple DG, Cisneros-Heredia DF, Cogger HG, Colli GR, de Silva A, Eisemberg CC, Els J, Fong G A, Grant TD, Hitchmough RA, Iskandar DT, Kidera N, Martins M, Meiri S, Mitchell NJ, Molur S, Nogueira CdC, Ortiz JC, Penner J, Rhodin AGJ, Rivas GA, Rödel MO, Roll U, Sanders KL, Santos-Barrera G, Shea GM, Spawls S, Stuart BL, Tolley KA, Trape JF, Vidal MA, Wagner P, Wallace BP, Xie Y
A global reptile assessment highlights shared conservation needs of tetrapods.
Nature 2022, 605, 285-290.
Marin J, Clermont O, Royer G, Mercier-Darty M, Decousser JW, Tenaillon O, Denamur E, Blanquart F
The Population Genomics of Increased Virulence and Antibiotic Resistance in Human Commensal Escherichia coli over 30 Years in France.
Applied and Environmental Microbiology 2022, 88, e0066422.
Marin J, Journe F, Ghanem GE, Awada A, Kindt N
Cytokine Landscape in Central Nervous System Metastases..
Biomedicines 2022, 10,
Billard-Pomares T, Marin J, Quagliaro P, Méchaï F, Walewski V, Dziri S, Carbonnelle E
Use of Whole-Genome Sequencing to Explore Mycobacterium tuberculosis Complex Circulating in a Hotspot Department in France.
Microorganisms 2022, 10, 1586.
2021
Marin J, Brichler S, Lecuyer H, Carbonnelle E, Lescat M
Feedback From Medical and Biology Students on Distance Learning: Focus on a Useful Interactive Software, Wooclap®.
Journal of Educational Technology Systems 2021, 50, 188-200.
2020
Manceau M, Marin J, Morlon H, Lambert A
Model-Based Inference of Punctuated Molecular Evolution..
Molecular biology and evolution 2020, 37, 3308-3323.
Marin J, Achaz G, Crombach A, Lambert A
The genomic view of diversification..
Journal of evolutionary biology 2020, 33, 1387-1404.
2019
Rapacciuolo G, Graham CH, Marin J, Behm JE, Costa GC, Hedges SB, Helmus MR, Radeloff VC, Young BE, Brooks TM
Species diversity as a surrogate for conservation of phylogenetic and functional diversity in terrestrial vertebrates across the Americas..
Nature ecology & evolution 2019, 3, 53-61.
2018
Marin J, Hedges SB
Undersampling Genomes has Biased Time and Rate Estimates Throughout the Tree of Life..
Molecular biology and evolution 2018, 35, 2077-2084.
Marin J, Rapacciuolo G, Costa GC, Graham CH, Brooks TM, Young BE, Radeloff VC, Behm JE, Helmus MR, Hedges SB
Evolutionary time drives global tetrapod diversity..
Proceedings. Biological sciences 2018, 285,
Miralles A, Marin J, Markus D, Herrel A, Hedges SB, Vidal N
Molecular evidence for the paraphyly of Scolecophidia and its evolutionary implications..
Journal of evolutionary biology 2018, 31, 1782-1793.
2017
Marin J, Battistuzzi FU, Brown AC, Hedges SB
The Timetree of Prokaryotes: New Insights into Their Evolution and Speciation..
Molecular biology and evolution 2017, 34, 437-446.
Rapacciuolo G, Marin J, Costa GC, Helmus MR, Behm JE, Brooks TM, Hedges SB, Radeloff VC, Young BE, Graham CH
The signature of human pressure history on the biogeography of body mass in tetrapods.
Global Ecology and Biogeography 2017, 26, 1022-1034.
2016
Hassanin A, Nesi N, Marin J, Kadjo B, Pourrut X, Leroy É, Gembu GC, Musaba Akawa P, Ngoagouni C, Nakouné E, Ruedi M, Tshikung D, Pongombo Shongo C, Bonillo C
Comparative phylogeography of African fruit bats (Chiroptera, Pteropodidae) provide new insights into the outbreak of Ebola virus disease in West Africa, 2014-2016..
Comptes rendus biologies 2016, 339, 517-528.
Marin J, Hedges SB
Time best explains global variation in species richness of amphibians, birds and mammals.
Journal of Biogeography 2016, 43, 1069-1079.
2015
Hedges SB, Marin J, Suleski M, Paymer M, Kumar S
Tree of life reveals clock-like speciation and diversification..
Molecular biology and evolution 2015, 32, 835-845.
2014
Hedges SB, Marion AB, Lipp KM, Marin J, Vidal N
A taxonomic framework for typhlopid snakes from the Caribbean and other regions (Reptilia, Squamata).
2014
2013
Marin J, Donnellan SC, Hedges SB, Puillandre N, Aplin KP, Doughty P, Hutchinson MN, Couloux A, Vidal N
Hidden species diversity of Australian burrowing snakes (Ramphotyphlops).
Biological Journal of the Linnean Society 2013, 110, 427-441.
Marin J, Donnellan SC, Blair Hedges S, Doughty P, Hutchinson MN, Cruaud C, Vidal N
Tracing the history and biogeography of the Australian blindsnake radiation.
Journal of Biogeography 2013, 40, 928-937.
Sabbagh A, Marin J, Veyssière C, Lecompte E, Boukouvala S, Poloni ES, Darlu P, Crouau-Roy B
Rapid birth-and-death evolution of the xenobiotic metabolizing NAT gene family in vertebrates with evidence of adaptive selection..
BMC evolutionary biology 2013, 13, 62.
2012
Vidal N, Marin J, Sassi J, Battistuzzi FU, Donnellan S, Fitch AJ, Fry BG, Vonk FJ, Rodriguez de la Vega RC, Couloux A, Hedges SB
Molecular evidence for an Asian origin of monitor lizards followed by Tertiary dispersals to Africa and Australasia..
Biology letters 2012, 8, 853-855.
2010
Vidal N, Marin J, Morini M, Donnellan S, Branch WR, Thomas R, Vences M, Wynn A, Cruaud C, Hedges SB
Blindsnake evolutionary tree reveals long history on Gondwana..
Biology letters 2010, 6, 558-561.
Marin J, Crouau-Roy B, Hemptinne JL, Lecompte E, Magro A
Coccinella septempunctata (Coleoptera, Coccinellidae): a species complex?.
Zoologica Scripta 2010, 39, 591-602.