Members
First name: Rémi Last name: Gschwind Position: Post-Doc Email: remi.gschwind inserm.fr |
Research interest
My research focuses on the study of antibiotic resistance genes.
- First by utilizing functional metagenomics to discover previously unidentified resistance genes in environmental samples. In addition to this work, I also manage a database called ResFinderFG, which contains information on these genes.
- Second by studying the beta-lactamase and their encoding gene found in the intestinal microbiome.
Education
Degree
2019 : PhD of Microbiology
Research training (post doctoral)
Since May 2020 : Post-Doc in the team « EVRest » within the research unit UMR 1137 INSERM– “Infection . Antimicrobials. Modelling . Evolution”
List of the main publications
Bengtsson-Palme J, Abramova A, Berendonk TU, Coelho LP, Forslund SK, Gschwind R, Heikinheimo A, Jarquín-Díaz VH, Khan AA, Klümper U, Löber U, Nekoro M, Osińska AD, Ugarcina Perovic S, Pitkänen T, Rødland EK, Ruppé E, Wasteson Y, Wester AL, Zahra R
Towards monitoring of antimicrobial resistance in the environment: For what reasons, how to implement it, and what are the data needs?.
Environment International 2023, 178, 108089.
Gschwind R, Ugarcina Perovic S, Weiss M, Petitjean M, Lao J, Coelho LP, Ruppé E
ResFinderFG v2.0: a database of antibiotic resistance genes obtained by functional metagenomics.
Nucleic Acids Research 2023, 51, W493-W500.
Patrier J, Villageois-Tran K, Szychowiak P, Ruckly S, Gschwind R, Wicky PH, Gueye S, Armand-Lefevre L, Marzouk M, Sonneville R, Bouadma L, Petitjean M, Lamara F, de Montmollin E, Timsit JF, Ruppé E, French COVID Cohort Study Group
Oropharyngeal and intestinal concentrations of opportunistic pathogens are independently associated with death of SARS-CoV-2 critically ill adults.
Critical Care (London, England) 2022, 26, 300.
Deconinck L, Gschwind R, Petitjean M, Gueye S, Leflon-Guibout V, Maataoui N, Rondinaud E, Suard A, Gallais K, Richaud R, Fuchs A, Iung B, Alkhoder S, Ismaël S, Herrou J, Prié H, Armand-Lefèvre L, d'Humières C, Ruppé E
Endocarditis caused by Thalassospira sp.
IDCases 2021, 24, e01109.
Delaroche L, Bertine M, Oger P, Descamps D, Damond F, Genauzeau E, Meicler P, Le Hingrat Q, Lamazou F, Gschwind R, Ruppé E, Visseaux B
Evaluation of SARS-CoV-2 in semen, seminal plasma, and spermatozoa pellet of COVID-19 patients in the acute stage of infection.
PloS One 2021, 16, e0260187.
Gschwind R, Fournier T, Kennedy S, Tsatsaris V, Cordier AG, Barbut F, Butel MJ, Wydau-Dematteis S
Evidence for contamination as the origin for bacteria found in human placenta rather than a microbiota..
PloS one 2020, 15, e0237232.
Gschwind R, Fournier T, Butel MJ, Wydau-Dematteis S
[Microbiota establishment: an in utero colonization decisive for future health?]..
Medecine sciences : M/S 2018, 34, 331-337.
Towards monitoring of antimicrobial resistance in the environment: For what reasons, how to implement it, and what are the data needs?.
Environment International 2023, 178, 108089.
Gschwind R, Ugarcina Perovic S, Weiss M, Petitjean M, Lao J, Coelho LP, Ruppé E
ResFinderFG v2.0: a database of antibiotic resistance genes obtained by functional metagenomics.
Nucleic Acids Research 2023, 51, W493-W500.
Patrier J, Villageois-Tran K, Szychowiak P, Ruckly S, Gschwind R, Wicky PH, Gueye S, Armand-Lefevre L, Marzouk M, Sonneville R, Bouadma L, Petitjean M, Lamara F, de Montmollin E, Timsit JF, Ruppé E, French COVID Cohort Study Group
Oropharyngeal and intestinal concentrations of opportunistic pathogens are independently associated with death of SARS-CoV-2 critically ill adults.
Critical Care (London, England) 2022, 26, 300.
Deconinck L, Gschwind R, Petitjean M, Gueye S, Leflon-Guibout V, Maataoui N, Rondinaud E, Suard A, Gallais K, Richaud R, Fuchs A, Iung B, Alkhoder S, Ismaël S, Herrou J, Prié H, Armand-Lefèvre L, d'Humières C, Ruppé E
Endocarditis caused by Thalassospira sp.
IDCases 2021, 24, e01109.
Delaroche L, Bertine M, Oger P, Descamps D, Damond F, Genauzeau E, Meicler P, Le Hingrat Q, Lamazou F, Gschwind R, Ruppé E, Visseaux B
Evaluation of SARS-CoV-2 in semen, seminal plasma, and spermatozoa pellet of COVID-19 patients in the acute stage of infection.
PloS One 2021, 16, e0260187.
Gschwind R, Fournier T, Kennedy S, Tsatsaris V, Cordier AG, Barbut F, Butel MJ, Wydau-Dematteis S
Evidence for contamination as the origin for bacteria found in human placenta rather than a microbiota..
PloS one 2020, 15, e0237232.
Gschwind R, Fournier T, Butel MJ, Wydau-Dematteis S
[Microbiota establishment: an in utero colonization decisive for future health?]..
Medecine sciences : M/S 2018, 34, 331-337.
Exhaustive list of publications
2023
Bengtsson-Palme J, Abramova A, Berendonk TU, Coelho LP, Forslund SK, Gschwind R, Heikinheimo A, Jarquín-Díaz VH, Khan AA, Klümper U, Löber U, Nekoro M, Osińska AD, Ugarcina Perovic S, Pitkänen T, Rødland EK, Ruppé E, Wasteson Y, Wester AL, Zahra R
Towards monitoring of antimicrobial resistance in the environment: For what reasons, how to implement it, and what are the data needs?.
Environment International 2023, 178, 108089.
Gschwind R, Ugarcina Perovic S, Weiss M, Petitjean M, Lao J, Coelho LP, Ruppé E
ResFinderFG v2.0: a database of antibiotic resistance genes obtained by functional metagenomics.
Nucleic Acids Research 2023, 51, W493-W500.
2022
Patrier J, Villageois-Tran K, Szychowiak P, Ruckly S, Gschwind R, Wicky PH, Gueye S, Armand-Lefevre L, Marzouk M, Sonneville R, Bouadma L, Petitjean M, Lamara F, de Montmollin E, Timsit JF, Ruppé E, French COVID Cohort Study Group
Oropharyngeal and intestinal concentrations of opportunistic pathogens are independently associated with death of SARS-CoV-2 critically ill adults.
Critical Care (London, England) 2022, 26, 300.
2021
Deconinck L, Gschwind R, Petitjean M, Gueye S, Leflon-Guibout V, Maataoui N, Rondinaud E, Suard A, Gallais K, Richaud R, Fuchs A, Iung B, Alkhoder S, Ismaël S, Herrou J, Prié H, Armand-Lefèvre L, d'Humières C, Ruppé E
Endocarditis caused by Thalassospira sp.
IDCases 2021, 24, e01109.
Delaroche L, Bertine M, Oger P, Descamps D, Damond F, Genauzeau E, Meicler P, Le Hingrat Q, Lamazou F, Gschwind R, Ruppé E, Visseaux B
Evaluation of SARS-CoV-2 in semen, seminal plasma, and spermatozoa pellet of COVID-19 patients in the acute stage of infection.
PloS One 2021, 16, e0260187.
2020
Gschwind R, Fournier T, Kennedy S, Tsatsaris V, Cordier AG, Barbut F, Butel MJ, Wydau-Dematteis S
Evidence for contamination as the origin for bacteria found in human placenta rather than a microbiota..
PloS one 2020, 15, e0237232.
2018
Gschwind R, Fournier T, Butel MJ, Wydau-Dematteis S
[Microbiota establishment: an in utero colonization decisive for future health?]..
Medecine sciences : M/S 2018, 34, 331-337.