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Alaksh Choudhury | IAME
Alaksh Choudhury - Former member -

Publications

Deep mutational scanning reveals the molecular determinants of RNA polymerase-mediated adaptation and tradeoffs

2023

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PubMed

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Nature Communications

Choudhury A et al.Choudhury A, Gachet B, Dixit Z, Faure R, Gill RT, Tenaillon O

Cross-resistance to cefiderocol and ceftazidime-avibactam in KPC β-lactamase mutants and the inoculum effect

2021

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PubMed

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Clinical Microbiology and Infection: The Official Publication of the European Society of Clinical Microbiology and Infectious Diseases

Hobson CA et al.Hobson CA, Cointe A, Jacquier H, Choudhury A, Magnan M, Courroux C, Tenaillon O, Bonacorsi S, Birgy A

KPC Beta-Lactamases Are Permissive to Insertions and Deletions Conferring Substrate Spectrum Modifications and Resistance to Ceftazidime-Avibactam

2020

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PubMed

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Antimicrobial Agents and Chemotherapy

Hobson CA et al.Hobson CA, Bonacorsi S, Jacquier H, Choudhury A, Magnan M, Cointe A, Bercot B, Tenaillon O, Birgy A

CRISPR/Cas9 recombineering-mediated deep mutational scanning of essential genes in Escherichia coli

2020

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PubMed

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Molecular Systems Biology

Choudhury A et al.Choudhury A, Fenster JA, Fankhauser RG, Kaar JL, Tenaillon O, Gill RT

Determinants for Efficient Editing with Cas9-Mediated Recombineering in Escherichia coli

2020

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PubMed

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ACS synthetic biology

Choudhury A et al.Choudhury A, Fankhauser RG, Freed EF, Oh EJ, Morgenthaler AB, Bassalo MC, Copley SD, Kaar JL, Gill RT

Integrating CRISPR-Enabled Trackable Genome Engineering and Transcriptomic Analysis of Global Regulators for Antibiotic Resistance Selection and Identification in Escherichia coli

2020

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PubMed

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mSystems

Chen C et al.Chen C, Choudhury A, Zhang S, Garst AD, Song X, Liu X, Chen T, Gill RT, Wang Z

Small molecule regulated sgRNAs enable control of genome editing in E. coli by Cas9

2020

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PubMed

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Nature Communications

Iwasaki RS et al.Iwasaki RS, Ozdilek BA, Garst AD, Choudhury A, Batey RT

Engineering regulatory networks for complex phenotypes in E. coli

2020

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PubMed

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Nature Communications

Liu R et al.Liu R, Liang L, Freed EF, Choudhury A, Eckert CA, Gill RT